Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq71022 183 3e-41 seq144 123 2e-23 seq25532 116 4e-21 seq36344 96.9 3e-15 seq31860 87.8 2e-12 >seq71022 Length=3779 Score = 183 bits (202), Expect = 3e-41 Identities = 496/746 (66%), Gaps = 21/746 (3%) Strand=Plus/Plus Query 153072 TTGACAACTTGAAATTCGCCCGACAATACACGTC--TCAAAAACAAATTACTGTGAAACG 153129 |||||||| || ||||| ||||| | ||||||| | | || | | |||| || | Sbjct 1119 TTGACAACCTGGAATTCACCCGATAGGACACGTCGATTGTAGACGTTTGA-TGTGTAA-G 1176 Query 153130 GTTCAAACGACTCGTTGTTATTGAGTATTTGTGCGGTCGTGGCCGTCGGCATGTACGCCA 153189 ||||||| || || ||||| ||| |||||||| |||| || || ||||| |||| Sbjct 1177 GTTCAAATGATTCATTGTTTCCGAGAATTTGTGCAGTCGAAGCGGTTGGCATTGGTGCCA 1236 Query 153190 CAAGCAACGAATTACGTAATCCGTGTTTTTGTA-TGTTCATCTTCAATTGTGACCAGTCC 153248 ||| | ||||| | | || | |||||| | | | ||| |||||||| ||| | | Sbjct 1237 AAAGTAGGGAATTTC-TGATACCTGTTTTGGCAATTTTCTGCTTCAATTCATCCCAATTC 1295 Query 153249 CATAACGAAGTAGGTATCGCATTCCACAAATCGTATTGCAATATCCCTTGGCTAGCTTTG 153308 ||||| || ||| | | ||||| || || ||||| || |||| ||| || | Sbjct 1296 CATAAATCTGTTGGTTTTTTGTCCCACATGTCATACTGCAAAATGCCTTTACTAACTGGG 1355 Query 153309 CTACCGGCAAACGTGCTATACG-GC--TCACTGTCAGACGCCAGTTTCAAACTGGCATCG 153365 | || || | || ||| | || ||| | || | ||| || ||| || || Sbjct 1356 CAGCCTTCATAAGTCTCATAGGTGCCTTCAATTTCGG---CCAATTCAGTACTAGCTTCC 1412 Query 153366 AGCGCGGCATGATACACAGTTTCGGAAATCTGTTTGTTCAGTAAAACGGCAGCATCGCTC 153425 | || ||| ||| | || ||| |||| |||| ||||| ||| ||| | |||||| Sbjct 1413 AAGGCACCATAATAAATCGTCTCGAAAATTTGTTGGTTCAATAATTGGGCTTCTTCGCTC 1472 Query 153426 ACGTACGGTATGCGCAACATGACAAATGCATCGGCCAAACCTTGAATGCCAATGCCTATG 153485 |||| || |||| | || ||||||||| |||| || |||| |||||| || ||| Sbjct 1473 TCGTAAGGGTAACGCATTAGGATAAATGCATCAGCCATGCCCTGAACGCCAATTCCAATG 1532 Query 153486 GGACGATGGCGCATATTAGAtttttttGCAGCTTCAACAGGATAGAAATTGCGGTCGATA 153545 |||||||| | |||||| ||| || | || || | ||||| || ||| || || Sbjct 1533 GGACGATGTCTCATATTCGATGTTCTAGCTTCTGGGATCGGATAAAAGTTGACATCAATG 1592 Query 153546 ATTTTATTTAAACTAATCACGACATGTTTCACCACAGAATGCAACAGTTGAAAATCAAAC 153605 |||||||| ||| | || || ||| || | ||| | ||||||||| Sbjct 1593 ATTTTATTCAAATTTTTCGTTACGGTTTTTGTGACTTCTTTCAATTTCTTGAAATCAAAC 1652 Query 153606 G---TTCCATTAATGATATATTTGTTGACGGCAATCGACGCCAAGTTGCAAACGGCAGTT 153662 | || ||||| | | | | | || | |||||| || ||||| || || |||||| | Sbjct 1653 GTTTTTTCATTAGTAACAAACATATTCAAGGCAATTGAGGCCAAATTACAGACGGCAACT 1712 Query 153663 TCGTCGGGGGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCATTTTATCAGGCCG 153722 || || |||||| || || || | |||||| ||||||||||| || || Sbjct 1713 TCATCTTTACTTGAATATTCGACAATCTCTGTACACAAGTTGCTGCATTTAAT--GGTTC 1770 Query 153723 CAATTACTTTGATTGCT---TTTGCGGTTACAAGCGTCCTTGTATAGCATGTATGGTGTG 153779 ||| || |||| | | | ||| | |||||||||||| ||||| ||||| || || || Sbjct 1771 CAA-TATTTTGTTGGTTAGATTTTCTGTTACAAGCGTCTTTGTAGAGCATATAAGGCGTA 1829 Query 153780 CCGGTTTCGGCTTGAATTTCTATAAT 153805 || ||||| ||||| ||| ||||| Sbjct 1830 CCCGTTTCAACTTGAGATTCAATAAT 1855 >seq144 Length=14776 Score = 123 bits (136), Expect = 2e-23 Identities = 150/199 (75%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACC 139626 || |||||||| |||||||||||||| || || | || | ||||| | ||||| || Sbjct 13170 GTCGACTCTTTCTGAATGTTATAATCTGACAGGGTACGTCCA-TCTTCCAATTGTTTTCC 13112 Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686 |||| |||||| |||||||||||| || || || ||||| || || ||| | || | || Sbjct 13111 AGCAAAGATCAAACGTTGCTGATCTGGGGGGATACCTTCCTTATC-TTGAATCTTGGCTT 13053 Query 139687 TAGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACG 139745 || | | ||| | ||||||| ||||| ||||| | || | ||||| || ||||||| Sbjct 13052 TAACGTTTTCAATGGTGTCGGAAGGCTCAACCTCCAATGTAATGGTCTTTCCAGTCAACG 12993 Query 139746 TTTTTACGAATATTTGCAT 139764 | || ||||| |||||||| Sbjct 12992 TCTTGACGAAAATTTGCAT 12974 Score = 100 bits (110), Expect = 3e-16 Identities = 143/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACC 139626 ||||||||||| |||||||| || || || || | || | ||||| | ||||| || Sbjct 13510 GTAGACTCTTTCTGAATGTTGTAGTCAGACAAAGTACGTCCA-TCTTCCAATTGTTTTCC 13452 Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686 ||| | |||| ||| |||||||| ||||| || ||||||||||| ||| || ||| Sbjct 13451 AGCGAAAATCAAACGCTGCTGATCTGGAGGAATACCTTCTTTGTCTTGGATCTTAGCTTT 13392 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | ||| | || || | || || || || | || | ||| || ||||| || || Sbjct 13391 CACGTTTTCAATAGTATCCGAAGGTTCGACTTCCAATGTGATCGTTTTTCCGGTTAAGGT 13332 Query 139747 TTTTACGAATATTTGCATA 139765 ||| ||||| ||||||||| Sbjct 13331 TTTGACGAAAATTTGCATA 13313 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| |||||||| || || ||| || |||| ||||| | |||||||| Sbjct 14650 GTCGACTCCTTTTGAATATTGTAGTCGGACAAAGTGCGGCCATCTTCCAATTGTTTACCG 14591 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || | |||| ||| |||||||| ||||| || ||||||||||| ||| || || Sbjct 14590 GCGAAAATCAAACGCTGCTGATCTGGAGGAATACCTTCTTTGTCCTGGATCTTGGCCTTA 14531 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | ||| | || || | |||||| || || | ||| | || ||||| ||||| ||| Sbjct 14530 ACGTTTTCAATGGTATCTGAGGGCTCAACTTCCAAGGTGATAGTTTTGCCAGTCAAAGTT 14471 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 14470 TTAACGAAAATCTGCAT 14454 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | ||| || || | ||||||||||| ||||| || || ||| Sbjct 12973 GCCTCCACGAAGACGGAGAACCAAATGCAATGTAGACTCTTTCTGAATATTGTAGTCGGA 12914 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || || | |||||| | ||| || |||||| |||||| ||| ||||| || || || Sbjct 12913 CAAGGTACGTCCGTCTTCCAACTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCTGGTGG 12854 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| || || ||| || |||| | || | || || | ||||| || Sbjct 12853 AATACCTTCCTTATCCTGGATCTTAGCCTTTACGTTCTCGATCGTATCAGATGGCTCGAC 12794 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | || | ||||| || ||||| || || |||||||| ||||| Sbjct 12793 CTCCAAAGTGATGGTCTTACCAGTCAATGTCTTGACGAATATCTGCAT 12746 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | || || || | || ||||||||||| || || || || Sbjct 14225 GCCACCACGGAGACGGAGTACCAAATGCAATGTCGACTCTTTTTGGATATTGTAGTCAGA 14166 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || ||||| ||||| | || || ||||| | |||| ||| || ||||| ||||| Sbjct 14165 CAATGTGCGGCCATCTTCCAATTGCTTTCCAGCGAAAATCAAACGCTGTTGATCTGGAGG 14106 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 |||||||| || || ||| |||| | |||| | ||| | || || | |||||| | Sbjct 14105 GATGCCTTCCTTATC-TTGAATTTTAGCCTTTACATTTTCAATGGTATCCGAGGGCTCGA 14047 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | || | ||| | || ||||| || || ||||| ||||| |||||||| Sbjct 14046 CTTCCAAGGTGATGGTTTTGCCAGTTAAGGTTTTCACGAAGATTTGCAT 13998 Score = 82.4 bits (90), Expect = 8e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACC 139626 || ||||| ||||||||||| || || || || | || | ||||| | || || || Sbjct 13738 GTCGACTCCTTTTGAATGTTGTAGTCTGACAAGGTACGTCCA-TCTTCCAATTGCTTTCC 13680 Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686 ||| | || |||||||| ||||| ||||| || ||||||||||| ||| || || Sbjct 13679 AGCGAAAATGAGACGTTGTTGATCTGGAGGAATACCTTCTTTGTCTTGGATCTTGGCCTT 13620 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | ||| | || || | |||||| || || | || | || || || ||||| || Sbjct 13619 AACGTTTTCAATAGTATCCGAGGGCTCGACTTCCAAAGTGATGGTTTTTCCTGTCAATGT 13560 Query 139747 TTTTACGAATATTTGCATA 139765 ||| || || || |||||| Sbjct 13559 TTTAACAAAAATCTGCATA 13541 >seq25532 Length=5913 Score = 116 bits (128), Expect = 4e-21 Identities = 154/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614 ||| ||||| | ||||||||||| || || || ||||| | || ||| || | |||||| Sbjct 935 AACCAAGTGCAATGTAGACTCTTTCTGGATATTGTAATCACCCAATGTCCTAGCGTCTTC 994 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 | ||||| |||||| | |||| | ||| ||||| || || ||||||||||| || | Sbjct 995 CAATTGTTTGCCAGCAAAAATCAATCTTTGTTGATCTGGTGGGATGCCTTCTTTATC-CT 1053 Query 139675 GATTTTTTGTTTTAGCTGTTCCACT-GTGTCGGTGGGCTCCACCTCAACGGTCACCGTCT 139733 || |||| || | || || | ||||||| | ||| || |||| || | |||| Sbjct 1054 GAATTTTACCCTTGACACTTTCAATCGTGTCGGCTGCCTCAACTTCAAGCGTTATTGTCT 1113 Query 139734 TGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | || ||||| ||||| ||||| |||||||| Sbjct 1114 TTCCTGTCAATGTTTTAACGAAAATTTGCAT 1144 >seq36344 Length=11671 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 || || || || | ||| | || || || | || || || || || ||||| || ||| Sbjct 905 TGACCACCACGGAGACGGAGGACCAAATGCAATGTTGATTCCTTCTGGATGTTGTAGTCG 846 Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 || || | ||||||||| || || |||||| | |||| |||||| || || || Sbjct 845 GACAAGGTACGTCCGTCTTCGAGTTGCTTGCCAGCAAAAATCAAACGTTGTTGGTCTGGG 786 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTC 139713 || || ||||||||||| ||| |||| | ||||| | || | |||||| | || || Sbjct 785 GGGATTCCTTCTTTGTCT-TGAATTTTAGCTTTTACATTCTCAATTGTGTCTGACGGTTC 727 Query 139714 CACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || || | || | || || || ||||| || || ||||||||||||||| Sbjct 726 GACTTCCAATGTAATAGTTTTTCCAGTCAAAGTCTTGACGAATATTTGCATA 675 >seq31860 Length=14314 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||||||||||||||| || ||||| | ||| | ||||| | ||||| ||| Sbjct 1258 GTGGACTCTTTTTGAATGTTGTAGTCGCTAAGTGTTTTGCCATCTTCCAATTGTTTGCCA 1199 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| | |||| | ||||||||| || || ||||||||||| || || || ||| Sbjct 1198 GCAAAAATCAATCTTTGCTGATCTGGTGGGATGCCTTCTTTATCCTGAATCTTCAATTTG 1139 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | ||| | | || | | ||| | |||| || | || || ||||| | ||| Sbjct 1138 ACATTTTCAATAGAATCTGAGCCCTCAGCTTCAAGTGTTATTGTTTTTCCGGTTAGGGTT 1079 Query 139748 TTTACGAATATTTGCATAGCT 139768 || | ||||||||||||| || Sbjct 1078 TTAATGAATATTTGCATACCT 1058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495563241994400