Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq71022 594 7e-165 seq1270 185 1e-41 >seq71022 Length=3779 Score = 594 bits (658), Expect = 7e-165 Identities = 1262/1869 (68%), Gaps = 26/1869 (1%) Strand=Plus/Plus Query 78718 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 78777 || |||||||||| | || ||||| || || | ||| |||||||| ||||||| | Sbjct 780 GTAAATTGAATGGCATTAACGGCTGGTTTTGTTCGCAAATAATACATTCCAGTTTTTAAA 839 Query 78778 CCGAGACT-CCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTAT 78836 || ||| | ||| ||| | || || || |||||||| |||| | || || || | Sbjct 840 CC-AGATTTCCAGCCGAAAAAGTGAATTGAGGTTAGTTTTCCATAATTGGGCTCGGCGAC 898 Query 78837 ATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT 78896 ||| || || | || || ||||||||||| ||||| | ||||||||||||||||| Sbjct 899 ATGAATGTTGAATGACTGGGACTGATCGATGAATGCTCCTCGATCTGCAGCCATTTTTAT 958 Query 78897 GATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAA 78955 | | || | || |||||||| ||||| || || || | ||| || ||||| Sbjct 959 GGCCACTTTGACCGAAACTTCCCAAACGGTTTTGTACAATTCACG-AATGTCAAATGGAA 1017 Query 78956 GGTTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCAT 79012 | | |||| |||||||| || || |||| ||| |||| || || || || | Sbjct 1018 TTTCTTCAATATTTTGAATGGAACCGTTATTGGCCAAAATTTTATTTTTCATATCATCGT 1077 Query 79013 TCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTC 79072 |||||| | | || |||||| || |||| | ||| |||| || || || ||||| | Sbjct 1078 CCCATAAATCGCGTTCAGTTAAATCTTTAAGCAAATGATGATTGACAACCTGGAATTCAC 1137 Query 79073 CAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTC 79132 | || | || | ||| |||| | || || || ||||| | |||||||| |||| Sbjct 1138 CCGATAGGACACGTCGATTGTAGACGTTTGATGTGTAAGGTTCAAATGATTCATTGTTTC 1197 Query 79133 CCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGAC 79192 | | |||||| ||||| || || |||||||| ||||||| | || |||||| | || Sbjct 1198 CGAGAATTTGTGCAGTCGAAGCGGTTGGCATTGGTGCCAAAAGTAGGGAATTTCTGATAC 1257 Query 79193 CGTATGATCTG---ATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGACGGGACAA 79249 | || | || ||||| | || | ||||||| ||| | ||| | || Sbjct 1258 C---TGTTTTGGCAATTTTCTGCTTCAATTCATCCCAATTCCATAAATCTGTTGGTTTTT 1314 Query 79250 CATTCCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGATCCTGTGTATGTTTCAT 79309 | ||| | ||||| || | ||| || |||||| | | ||| || || |||| Sbjct 1315 TGTCCCACATGTCATACTGCAAAATGCCTTTACTAACTGGGCAGCCTTCATAAGTCTCAT 1374 Query 79310 AAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAATAAATGGTTT 79369 | | ||||| ||||||| |||||| ||| || || || || || |||||||| || | Sbjct 1375 AGGTGCCTTCAATTTCGGCCAATTCAGTACTAGCTTCCAAGGCACCATAATAAATCGTCT 1434 Query 79370 CGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAATTTAAGAGAA 79429 ||||||| | | || | ||| |||||| ||| || | || ||| | || | Sbjct 1435 CGAAAATTTGTTGGTTCAATAATTGGGCTTCTTCGCTCTCGTAAGGGTAACGCATTAGGA 1494 Query 79430 TAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAAA 79489 |||| || || || | || ||||| ||||| || || || | ||||||| |||| || Sbjct 1495 TAAATGCATCAGCCATGCCCTGAACGCCAATTCCAATGGGACGATGTCTCATATTCGATG 1554 Query 79490 TTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATT---CCTGA 79546 || ||||||||| || |||||| | || | ||| || |||||||| | ||| | | | Sbjct 1555 TTCTAGCTTCTGGGATCGGATAAAAGTTGACATCAATGATTTTATTCAAATTTTTCGTTA 1614 Query 79547 CTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAA---TCGTCCATCTATTACAA 79603 | || | |||| || || | ||| |||||||| | | ||| | |||| Sbjct 1615 CGGTTTTTGTGACT---TCTTTCAATTTCTTGAAATCAAACGTTTTTTCATTAGTAACAA 1671 Query 79604 ACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATT 79663 |||| ||||| || | || |||| |||||| ||||| || |||| | | ||||| Sbjct 1672 ACATATTCAAGGCAATTGAGGCCAAATTACAGACGGCAACTTCATCTTTACTTGAATATT 1731 Query 79664 GTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCT 79723 | || || || || | ||| || || ||||||||||| | ||||||||| ||| | Sbjct 1732 CGACAATCTCTGTACACAAGTTGCTGCATTTAATGGTTCCAATATTTTGTTGGTTAGATT 1791 Query 79724 TTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTA 79783 || ||||||| || || || || || || | || ||||| ||||||| |||||||| | Sbjct 1792 TTCTGTTACAAGCGTCTTTGTAGAGCATATAAGGCGTACCCGTTTCAACTTGAGATTCAA 1851 Query 79784 TAATCGCTTTCCAGACGACTCGAGCCTTTAT-TATAGACTTGTATCTCTTTTCTCTTTCG 79842 |||| || ||||| | | | ||||| || | || | | | |||| |||| Sbjct 1852 TAATGGCAAACCAGAGGTCCTGTGCCTTAATCTGGCGA-ATAAAACGACCTTCTTTTTCA 1910 Query 79843 TATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCG 79902 |||||||| || ||| ||| ||||| || ||||| |||| || ||||| || || Sbjct 1911 TATTGTGTGTACAATTTTTCAAACTCCTCACCCCATGTGTCGTGTAGACCAGGGCACTCA 1970 Query 79903 TCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGA 79962 | ||| |||||||| |||| | ||| | || || | || |||||| | ||| || Sbjct 1971 TGAGGGCACATCAAACTCCACATTTCATTAGACTCGACCCTTTGCATAAACAAATCTGGG 2030 Query 79963 ATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTA 80022 |||||||| || | ||||| ||| | | || || || || || ||||| || || Sbjct 2031 ATCCAAAGGGCGAAAAATAAATCACGAGCCCTTCCTTCTTCCTTGCCCGTATTTTTCTTC 2090 Query 80023 AGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCC 80082 | || |||||| | | || || ||||| ||||| | || ||||| | | | || Sbjct 2091 AAGTCTAGGAACTCGAAAACGTCCCCGTGCCAAGGTTCAAGATAAATGGCAAAAGCGCCA 2150 Query 80083 GGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATT 80142 |||| || || || ||||| || | ||| | ||| || || || || |||| ||||||| Sbjct 2151 GGTCTCTTATTACCACCCTGGTCCACGTAACGAGCCGTATTGTTGTACACTCGCAACATT 2210 Query 80143 GGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATA 80202 || | | ||||| || | || || || |||| |||||| |||| |||| |||||| Sbjct 2211 GGTACTAGGCCATTTGAAATGCCGTTAGTACCGGCGATATAAGTTCCCTTGGCCCGAATA 2270 Query 80203 TTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAAC 80262 || ||| || ||||| ||||| |||||| | || || || | || || Sbjct 2271 CAGTGAACATTTAGGCCAATTCCGCCTGCAGATTTAGATACTAGCGCACACTGCTTCAAG 2330 Query 80263 GTATCATAGATGCCCTCTATGCTATCATCAATCAT-GTTAAGTAGAAAACAGCTAGACAT 80321 ||||| || |||||||| || ||||||||| |||| || || |||| || | |||| Sbjct 2331 GTATCGTAAATGCCCTCAATACTATCATCACTCATCGTCAATAAGAAGCAAGAT-GACAA 2389 Query 80322 TTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTC 80381 || ||||| || |||| ||| || ||||| || || || || || | ||| Sbjct 2390 CTGAGGACGAGGGGTGGCCGCTGCAAACAATGTAGGCGACGCATGAGTGAAATAACGTTC 2449 Query 80382 AGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGC 80441 ||||| || || ||||||||||| || || || || ||| |||||| ||||| || Sbjct 2450 AGACAACAGGTTATACGTCTCAATGGCAGAGTCAATGTCCTCCCCATGAATGCCTACAGC 2509 Query 80442 GACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTA 80501 || | ||| ||||| ||||| || | || || | || || || |||||||| || Sbjct 2510 TACTCTCATCAACATATGCTGTGGACGCTCCACAACTTTCCCCTTAATCTTCAACAAATA 2569 Query 80502 AGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 80561 |||| |||||| ||||| || || ||||| ||||| ||| || || |||||||| || Sbjct 2570 AGATCGTTCCAAGGTTTTGAAGCCGAAATAATTGTAGCCAAAATCACGATCGTAAATGAT 2629 Query 80562 AACCGAGTT 80570 |||| || Sbjct 2630 GGCCGAATT 2638 >seq1270 Length=21014 Score = 185 bits (204), Expect = 1e-41 Identities = 369/542 (68%), Gaps = 5/542 (1%) Strand=Plus/Minus Query 49669 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 49728 || || ||||| || || |||||||| ||||| || || ||||| | ||| ||| | Sbjct 10759 TTCTGATATTCGCCGACTTTCTTTTCGAAGAAATTCGTCTTGCCTTCTAGTGAAATAGAT 10700 Query 49729 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTC-AGAAAT 49787 |||||||||| || ||||| || || |||||| | | ||||||||| | ||| Sbjct 10699 TCCATGAAATTGAATGGATTTTTAGTGTTGTAAATTCGTCCGACTCCCAATTCTATCAAT 10640 Query 49788 CAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 49847 | ||| || || || ||||| |||||| | ||| | || |||||||| || | | Sbjct 10639 -AGTCTGTCAGCAACGAATTCAATATATTCTGACATAAGTTTGCAATTCATGCCAAGCAT 10581 Query 49848 TTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAAT 49907 | |||||| | || | || | ||||| |||||||| || || || ||||| Sbjct 10580 ATCAACTGGTAAGGCATCTGTTAAGAATTCCTGTTCAATTTCAACAGCTTCACGGATAAT 10521 Query 49908 AGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGAA 49967 | | |||||| | ||| || | ||| | ||||| | || || || Sbjct 10520 TTCGATGATTCTTTCTTTTGTTGGTTTCTGGACTAAGTAACGGAACATAAGGCAGGCAAA 10461 Query 49968 ATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCAT 50027 |||||||| | || || || | | ||| |||||||| || || || || || ||||| Sbjct 10460 GTCGCAGTGTAATCCTTCATCACGAGAAATGAGTTCGTTTGAGAATGTCAGACCAGGCAT 10401 Query 50028 TAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTC 50087 |||||||| || |||||||| || ||||| ||||| || ||||| |||||||| Sbjct 10400 AAGGCCACGTTTCTTAAGCCAGAAAATGGAAGCAAAACTTCCGCTGAAGAAAATTCCTTC 10341 Query 50088 TACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCA-TG--TATCCACTT 50144 || || ||||| || | || | ||||| ||| ||||| | | | || |||||| | Sbjct 10340 GACGGCAGCAAATGCTATAATGCGTTCTCCGTAATTGGCGTTCTGACTGCATATCCATTG 10281 Query 50145 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATA 50204 ||||||||||||||||||||| ||||| || | || || | ||||| || |||| Sbjct 10280 AATAGCCCAATCGGCCTTCTTTTTGACACATGGAAGGGTCTCAACTGCATTGAATAGATG 10221 Query 50205 GT 50206 || Sbjct 10220 GT 10219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717543734581480