Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq1270 118 1e-21 >seq1270 Length=21014 Score = 118 bits (130), Expect = 1e-21 Identities = 370/569 (65%), Gaps = 7/569 (1%) Strand=Plus/Minus Query 13519 AAAACT-AAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCC 13577 |||||| |||||||| | || || | |||||||| || || | | ||||| Sbjct 10822 AAAACTTAAAAATCAGCGTCCAAAGTGAAAACATTGTCCAAACGTTTGGCCGTCACGCCA 10763 Query 13578 ATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATA 13637 | || |||||||| | ||| | ||||| ||||| || || || ||||| ||||| ||| Sbjct 10762 AACTTCTGATATTCGCCGACTTTCTTTTCGAAGAAATTCGTCTTGCCTTCTAGTGAAATA 10703 Query 13638 TTTTCCATAAAATCAAATGGATTTAT--TGACATAAACACTTTATCACAA-CCTAGTTCT 13694 |||||| |||| ||||||||| | || |||| || || | || | |||| Sbjct 10702 GATTCCATGAAATTGAATGGATTTTTAGTGTTGTAAA---TTCGTCCGACTCCCAATTCT 10646 Query 13695 AATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCT 13754 | | || ||| ||||||| || |||||||||| ||||| | | |||||||| || Sbjct 10645 ATCAATAGTCTGTCAGCAACGAATTCAATATATTCTGACATAAGTTTGCAATTCATGCCA 10586 Query 13755 ATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTT 13814 | | | || || | || ||||| ||||| | ||| || ||||| || Sbjct 10585 AGCATATCAACTGGTAAGGCATCTGTTAAGAATTCCTGTTCAATTTCAACAGCTTCACGG 10526 Query 13815 ATAATAATTGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACAC 13874 ||||| | || | || || | || | || | || || | || Sbjct 10525 ATAATTTCGATGATTCTTTCTTTTGTTGGTTTCTGGACTAAGTAACGGAACATAAGGCAG 10466 Query 13875 GCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCT 13934 ||||| || || || | || ||||| | | ||| ||||||||||| ||||| | || Sbjct 10465 GCAAAGTCGCAGTGTAATCCTTCATCACGAGAAATGAGTTCGTTTGAGAATGTCAGACCA 10406 Query 13935 GGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATT 13994 ||||| | || ||||| || | ||| || || | |||||| ||| ||||| ||| Sbjct 10405 GGCATAAGGCCACGTTTCTTAAGCCAGAAAATGGAAGCAAAACTTCCGCTGAAGAAAATT 10346 Query 13995 CCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATC 14054 || || || |||||||| ||||| | |||||||| | || || | | ||||| Sbjct 10345 CCTTCGACGGCAGCAAATGCTATAATGCGTTCTCCGTAATTGGCGTTCTGACTGCATATC 10286 Query 14055 CATTTTCTAGCCCATTCAGAttttttttt 14083 |||| ||||||| || | || ||||| Sbjct 10285 CATTGAATAGCCCAATCGGCCTTCTTTTT 10257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479243732573800