Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq1270 129 6e-25 >seq1270 Length=21014 Score = 129 bits (142), Expect = 6e-25 Identities = 396/608 (65%), Gaps = 7/608 (1%) Strand=Plus/Minus Query 13307 AAAACT-AAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCC 13365 |||||| |||||||| | || || | |||||||| || || | | ||||| Sbjct 10822 AAAACTTAAAAATCAGCGTCCAAAGTGAAAACATTGTCCAAACGTTTGGCCGTCACGCCA 10763 Query 13366 ATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATA 13425 | || |||||||| | ||| | ||||| || || || || || ||||| ||||| ||| Sbjct 10762 AACTTCTGATATTCGCCGACTTTCTTTTCGAAGAAATTCGTCTTGCCTTCTAGTGAAATA 10703 Query 13426 TTTTCCATAAAATCGAATGGATTTGT--TGACATAAACACTTTATCACAA-CCTAGTTCT 13482 |||||| |||| |||||||||| | || |||| || || | || | |||| Sbjct 10702 GATTCCATGAAATTGAATGGATTTTTAGTGTTGTAAA---TTCGTCCGACTCCCAATTCT 10646 Query 13483 AATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCT 13542 | |||| ||| ||||||| || |||||||||| ||||| | | |||||||| || Sbjct 10645 ATCAATAGTCTGTCAGCAACGAATTCAATATATTCTGACATAAGTTTGCAATTCATGCCA 10586 Query 13543 ATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTT 13602 | | | || || | || ||||| ||||| | ||| || ||||| || Sbjct 10585 AGCATATCAACTGGTAAGGCATCTGTTAAGAATTCCTGTTCAATTTCAACAGCTTCACGG 10526 Query 13603 ATAATAATCTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACAC 13662 ||||| | || | || || | || | || | || || | || Sbjct 10525 ATAATTTCGATGATTCTTTCTTTTGTTGGTTTCTGGACTAAGTAACGGAACATAAGGCAG 10466 Query 13663 GCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCT 13722 ||||| || || || | || ||||| | | ||| ||||||||||| ||||| | || Sbjct 10465 GCAAAGTCGCAGTGTAATCCTTCATCACGAGAAATGAGTTCGTTTGAGAATGTCAGACCA 10406 Query 13723 GGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATT 13782 ||||| | || ||||| || | ||| || || | ||| || |||| ||||| ||| Sbjct 10405 GGCATAAGGCCACGTTTCTTAAGCCAGAAAATGGAAGCAAAACTTCCGCTGAAGAAAATT 10346 Query 13783 CCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATC 13842 || || || |||||||| ||||| | |||||||| | || || | | ||||| Sbjct 10345 CCTTCGACGGCAGCAAATGCTATAATGCGTTCTCCGTAATTGGCGTTCTGACTGCATATC 10286 Query 13843 CATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAAT 13902 |||| ||||||| || | || ||||| | | | | || || | |||||||||| Sbjct 10285 CATTGAATAGCCCAATCGGCCTTCTTTTTGACACATGGAAGGGTCTCAACTGCATTGAAT 10226 Query 13903 AAATGTTC 13910 | ||| || Sbjct 10225 AGATGGTC 10218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478105682553480