Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq25532 129 4e-25 seq144 127 2e-24 seq36344 100 2e-16 seq31860 98.7 8e-16 seq3660 89.7 4e-13 >seq25532 Length=5913 Score = 129 bits (142), Expect = 4e-25 Identities = 168/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || |||| ||| | ||||| || | || ||| || || | ||||||||| | Sbjct 918 CCACCGCGCAATCTGAGAACCAAGTGCAATGTAGACTCTTTCTGGATATTGTAATCACCC 977 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 ||||| | |||| |||||||||||||| ||||||||||||| |||||||| | || Sbjct 978 AATGTCCTAGCGTCTTCCAATTGTTTGCCAGCAAAAATCAATCTTTGTTGATCTGGTGGG 1037 Query 43003 ACACCTTCTTTTTCGCTGA--TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGA 43060 | |||||||| || |||| | || | ||||| || ||| |||||| | ||||| | Sbjct 1038 ATGCCTTCTTTATC-CTGAATTTTAC-CCTTGACACTTTCAATCGTGTCGGCTGCCTCAA 1095 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || | |||||| || ||||| || | ||||| || ||||||||||| Sbjct 1096 CTTCAAGCGTTATTGTCTTTCCTGTCAATGTTTTAACGAAAATTTGCAT 1144 >seq144 Length=14776 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| ||||| || | | |||||||| | || ||||||||| | |||||| || || Sbjct 14453 GCCACCACGGAGACGGAGTACCAAATGCAATGTCGACTCCTTTTGGATATTGTAGTCTGA 14394 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 ||||||||| | || || ||||||||||||||||||||||| ||||||||||| | || Sbjct 14393 CAATGTACGGCCATCTTCTAATTGTTTGCCGGCAAAAATCAAACGCTGTTGATCTGGAGG 14334 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | |||||| || || || |||| || | | | |||||| | |||||| Sbjct 14333 GATACCTTCCTTATCTTGAATTTTAGCTTTAACATTTTCGATTGTGTCCGAGGGCTCGAC 14274 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || ||||| || |||| |||||||| || |||||||| Sbjct 14273 TTCCAAGGTGATGGTTTTGCCAGTTAAGGTTTTCACGAAGATTTGCAT 14226 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | |||||||| | ||| ||| || || | ||||| || ||| Sbjct 13540 CCACCACGGAGACGAAGGACCAAATGCAAAGTAGACTCTTTCTGAATGTTGTAGTCAGAC 13481 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || |||||| | || ||||||||||| || || |||||||| ||||| ||||| | || Sbjct 13480 AAAGTACGTCCATCTTCCAATTGTTTTCCAGCGAAAATCAAACGCTGCTGATCTGGAGGA 13421 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||||||| || |||| |||| || | ||| || || || ||||| Sbjct 13420 ATACCTTCTTTGTCTTGGATCTTAGCTTTCACGTTTTCAATAGTATCCGAAGGTTCGACT 13361 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || ||||||||||||| ||||| || ||||||||||| Sbjct 13360 TCCAATGTGATCGTTTTTCCGGTTAAGGTTTTGACGAAAATTTGCAT 13314 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | |||||||| | || ||||||||| | |||||| |||||| Sbjct 14680 CCACCACGGAGACGGAGGACCAAATGCAATGTCGACTCCTTTTGAATATTGTAGTCGGAC 14621 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || || | || ||||||||||| ||||| |||||||| ||||| ||||| | || Sbjct 14620 AAAGTGCGGCCATCTTCCAATTGTTTACCGGCGAAAATCAAACGCTGCTGATCTGGAGGA 14561 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||||||| || |||| | || || | ||| || || | ||| || Sbjct 14560 ATACCTTCTTTGTCCTGGATCTTGGCCTTAACGTTTTCAATGGTATCTGAGGGCTCAACT 14501 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || |||||||| || || | |||||| || ||||| ||||| Sbjct 14500 TCCAAGGTGATAGTTTTGCCAGTCAAAGTTTTAACGAAAATCTGCAT 14454 Score = 95.1 bits (104), Expect = 9e-15 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| ||||| || | | |||||||| | || ||| ||||| | |||||| || || Sbjct 14225 GCCACCACGGAGACGGAGTACCAAATGCAATGTCGACTCTTTTTGGATATTGTAGTCAGA 14166 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 |||||| || | || |||||||| || || || |||||||| ||||||||||| | || Sbjct 14165 CAATGTGCGGCCATCTTCCAATTGCTTTCCAGCGAAAATCAAACGCTGTTGATCTGGAGG 14106 Query 43002 CACACCTTCTTTTTCGCTGA--TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCG 43059 | ||||| || || ||| | | |||| || | ||| || || | |||| Sbjct 14105 GATGCCTTCCTTATC-TTGAATTTTAGCCTTT-ACATTTTCAATGGTATCCGAGGGCTCG 14048 Query 43060 ACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || || | || || ||||| || |||| |||||||| || |||||||| Sbjct 14047 ACTTCCAAGGTGATGGTTTTGCCAGTTAAGGTTTTCACGAAGATTTGCAT 13998 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| ||||| || | | |||||||| | || ||||||||| | |||||| || || Sbjct 13997 GCCACCACGGAGACGGAGTACCAAATGCAATGTCGACTCCTTTTGGATATTGTAGTCAGA 13938 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 ||| ||||| | || || |||||||| || || |||||||| ||||||||||| | || Sbjct 13937 CAAAGTACGGCCATCTTCTAATTGTTTTCCTGCGAAAATCAAACGCTGTTGATCTGGTGG 13878 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | |||||| || || |||| | || || | | | || || | |||||| Sbjct 13877 GATACCTTCCTTATCCTGGATCTTGGCCTTAACGTTCTCGATGGTATCCGAGGGCTCGAC 13818 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || ||||| || || | || || || || |||||||| Sbjct 13817 TTCCAAGGTGATGGTTTTGCCAGTCAATGTCTTGACGAAGATTTGCAT 13770 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | |||||||| | || ||| || || | || ||||| ||| Sbjct 13200 CCACCACGGAGACGGAGGACCAAATGCAATGTCGACTCTTTCTGAATGTTATAATCTGAC 13141 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | |||||| | || ||||||||||| || ||||| ||||| || || ||||| | || Sbjct 13140 AGGGTACGTCCATCTTCCAATTGTTTTCCAGCAAAGATCAAACGTTGCTGATCTGGGGGG 13081 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||| || || ||| |||| || | ||| |||||| || ||| || Sbjct 13080 ATACCTTCCTTATCTTGAATCTTGGCTTTAACGTTTTCAATGGTGTCGGAAGGCTCAACC 13021 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || ||||| || | || || || ||||||||||| Sbjct 13020 TCCAATGTAATGGTCTTTCCAGTCAACGTCTTGACGAAAATTTGCAT 12974 >seq36344 Length=11671 Score = 100 bits (110), Expect = 2e-16 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | |||||||| | || ||||| || | ||||| |||||| Sbjct 902 CCACCACGGAGACGGAGGACCAAATGCAATGTTGATTCCTTCTGGATGTTGTAGTCGGAC 843 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || |||||| |||| || | ||| ||||| ||||||||||| || ||||| || | || Sbjct 842 AAGGTACGTCCGTCTTCGAGTTGCTTGCCAGCAAAAATCAAACGTTGTTGGTCTGGGGGG 783 Query 43003 ACACCTTCTTTTTCGCTGA---TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCG 43059 | |||||||| || ||| | | || || | ||| ||| |||||| | ||| Sbjct 782 ATTCCTTCTTTGTC-TTGAATTTTAGCTTTTACATTCT--CAATTGTGTCTGACGGTTCG 726 Query 43060 ACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || || | || ||||||||||| || | ||| || || || |||||||| Sbjct 725 ACTTCCAATGTAATAGTTTTTCCAGTCAAAGTCTTGACGAATATTTGCAT 676 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | |||||||| | || ||||||||| | |||||| |||||| Sbjct 121 CCACCACGGAGACGGAGGACCAAATGCAATGTCGACTCCTTTTGAATATTGTAGTCGGAC 62 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATC 42995 || ||||| | || ||||||||||| ||||| |||||||| ||||| ||||| Sbjct 61 AAAGTACGGCCATCTTCCAATTGTTTACCGGCGAAAATCAAACGCTGCTGATC 9 Score = 82.4 bits (90), Expect = 6e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 || ||||| | |||||| || ||||| ||||| | || || |||||||| ||||| ||| Sbjct 638 TCTTTTTGAATATTGTAGTCAGACAAAGTACGGCCATCTTCTAATTGTTTTCCGGCGAAA 579 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTC 43016 ||||| ||||||||||| | || | |||||| || || Sbjct 578 ATCAAACGCTGTTGATCTGGTGGAATACCTTCCTTATC 541 >seq31860 Length=14314 Score = 98.7 bits (108), Expect = 8e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || |||| ||||| |||||||| | ||| ||| ||||| | ||||| ||| Sbjct 1288 CCGCCGCGCAATCTTAGGACCAAATGCAATGTGGACTCTTTTTGAATGTTGTAGTCGCTA 1229 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||| | || |||||||||||||| ||||||||||||| || ||||| | || Sbjct 1228 AGTGTTTTGCCATCTTCCAATTGTTTGCCAGCAAAAATCAATCTTTGCTGATCTGGTGGG 1169 Query 43003 ACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | |||||||| || ||| ||| | |||||| | ||| | || |||| | Sbjct 1168 ATGCCTTCTTTATC-CTGAATCTTCAATTTGACATTTTCAATAGAATCTGAGCCCTCAGC 1110 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | ||||| |||||||||||||| ||||| | || |||||||| Sbjct 1109 TTCAAGTGTTATTGTTTTTCCGGTTAGGGTTTTAATGAATATTTGCAT 1062 >seq3660 Length=14069 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||| || | | |||||||| | || |||||||| | ||||| ||| | Sbjct 2517 CCTCCACGGAGACGGAGGACCAAATGCAATGTCGATTCCTTTTGAATGTTGTAGTCGCCC 2458 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 ||||| | | || |||||||||||||| ||||||||||| || |||||||| | || Sbjct 2457 AATGTTCTGCCATCTTCCAATTGTTTGCCAGCAAAAATCAAGCGTTGTTGATCTGGTGGG 2398 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||| || || ||| | ||||| | ||| || || ||| || || Sbjct 2397 ATTCCTTCCTTCTCTTGAATCTTAGCCTTGACATTTTCAATAGTATCCGAAGCTTCAACT 2338 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || ||||| || | ||| || || || |||||||| Sbjct 2337 TCCAATGTGATTGTCTTTCCAGTCAAAGTCTTGACGAAGATTTGCAT 2291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380994246147906