Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq71022 572 2e-158 seq1270 185 1e-41 >seq71022 Length=3779 Score = 572 bits (634), Expect = 2e-158 Identities = 1257/1879 (67%), Gaps = 14/1879 (1%) Strand=Plus/Plus Query 70785 TTTTTCCTTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTA 70844 |||| ||| || | ||||| ||||||| | || | ||| || || | ||| || Sbjct 764 TTTTGTCTTATCGACGGTAAATTGAATGGCATTAACGGCTGGTTTTGTTCGCAAATAATA 823 Query 70845 CATGCCTGTTTTTAGACCGAGACT-CCATCCGTAAAAATGCATACTCGTTAGTTTGGAAT 70903 ||| || ||||||| ||| ||| | ||| ||| |||| || || |||||||| || Sbjct 824 CATTCCAGTTTTTAAACC-AGATTTCCAGCCGAAAAAGTGAATTGAGGTTAGTTTTCCAT 882 Query 70904 AGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGT 70963 | | || ||||| | ||||| || | ||||| ||||||||||| ||||| | | Sbjct 883 AATTGGGCTCGGCGACATGAATGTTGAATGACTGGGACTGATCGATGAATGCTCCTCGAT 942 Query 70964 CTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGC 71022 ||||||||||||||||| | || | || |||||||| ||||| || || || | Sbjct 943 CTGCAGCCATTTTTATGGCCACTTTGACCGAAACTTCCCAAACGGTTTTGTACAATTCAC 1002 Query 71023 TTAATATCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCAATAATCCTA 71079 ||| || ||||| | | |||| |||||||| || || || | ||| || Sbjct 1003 G-AATGTCAAATGGAATTTCTTCAATATTTTGAATGGAACCGTTATTGGCCAAAATTTTA 1061 Query 71080 TTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTA 71139 ||||| || || || | |||||| | | || |||||| || |||| | |||| |||| Sbjct 1062 TTTTTCATATCATCGTCCCATAAATCGCGTTCAGTTAAATCTTTAAGCAAATGATGATTG 1121 Query 71140 ACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCC 71199 || || || ||||| || || | || | ||| |||| | || || || ||||| Sbjct 1122 ACAACCTGGAATTCACCCGATAGGACACGTCGATTGTAGACGTTTGATGTGTAAGGTTCA 1181 Query 71200 ACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAAT 71259 | ||| ||||| ||||| | |||||| ||||| || || || ||||| ||||||| | | Sbjct 1182 AATGATTCATTGTTTCCGAGAATTTGTGCAGTCGAAGCGGTTGGCATTGGTGCCAAAAGT 1241 Query 71260 AGACTATTTCTAAGACCATGTGATCGGA-TTTTATCTTTTAGAGATTCCCAATTCCAAAG 71318 || |||||| | ||| ||| | | | |||| | || | ||||||||||| | Sbjct 1242 AGGGAATTTCTGATACC-TGTTTTGGCAATTTTCTGCTTCAATTCATCCCAATTCCATAA 1300 Query 71319 ATCCGATGGTACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACTAGCGTATGATCC 71378 ||| | |||| ||||| |||||| | | || Sbjct 1301 ATCTGTTGGTTTTTTGTCCCACATGTCATACTGCAAAATGCCTTTACTAACTGGGCAGCC 1360 Query 71379 TGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCC 71438 | |||| || || || | ||||| ||||||| | |||| ||| || || || || || Sbjct 1361 TTCATAAGTCTCATAGGTGCCTTCAATTTCGGCCAATTCAGTACTAGCTTCCAAGGCACC 1420 Query 71439 ATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGG 71498 ||||||||| || |||||||| | | || | ||| ||||| ||| || | || Sbjct 1421 ATAATAAATCGTCTCGAAAATTTGTTGGTTCAATAATTGGGCTTCTTCGCTCTCGTAAGG 1480 Query 71499 ATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTG 71558 ||| | || ||||| || || || | || ||||||||||| || || || | || Sbjct 1481 GTAACGCATTAGGATAAATGCATCAGCCATGCCCTGAACGCCAATTCCAATGGGACGATG 1540 Query 71559 TCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATT 71618 |||| |||| || || ||||||||| || |||||| | || | ||| || |||||||| Sbjct 1541 TCTCATATTCGATGTTCTAGCTTCTGGGATCGGATAAAAGTTGACATCAATGATTTTATT 1600 Query 71619 GAGATTTCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAA---TCTCCC 71675 | |||| | || ||| || || || | ||| |||||||| | | | Sbjct 1601 CAAATTTTTCGTTACGGTTTTTGTGACTTCTTTCAATTTCTTGAAATCAAACGTTTTTTC 1660 Query 71676 ATCTATTACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGC 71735 || | ||||||| |||||||||| || |||| |||||| ||||| || |||| Sbjct 1661 ATTAGTAACAAACATATTCAAGGCAATTGAGGCCAAATTACAGACGGCAACTTCATCTTT 1720 Query 71736 ATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTG 71795 | | ||||| | ||| || || || | || || || || |||||||| | |||||| Sbjct 1721 ACTTGAATATTCGACAATCTCTGTACACAAGTTGCTGCATTTAATGGTTCCAATATTTTG 1780 Query 71796 TTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAAT 71855 ||| ||| ||| ||||||| || || || || || ||| | || ||||| ||||||| Sbjct 1781 TTGGTTAGATTTTCTGTTACAAGCGTCTTTGTAGAGCATATAAGGCGTACCCGTTTCAAC 1840 Query 71856 CTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGTATCTCTT 71915 |||||||| ||||| || ||||| | | | ||||| || | | | Sbjct 1841 TTGAGATTCAATAATGGCAAACCAGAGGTCCTGTGCCTTAATCTGGCGAATAAAACGACC 1900 Query 71916 TTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCC 71975 |||| |||| |||||||| || ||| ||| ||||| || ||||| | | || || || Sbjct 1901 TTCTTTTTCATATTGTGTGTACAATTTTTCAAACTCCTCACCCCATGTGTCGTGTAGACC 1960 Query 71976 AGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAA 72035 ||| || |||| || |||||||| |||| | ||| | | || | || |||||| Sbjct 1961 AGGGCACTCATGAGGGCACATCAAACTCCACATTTCATTAGACTCGACCCTTTGCATAAA 2020 Query 72036 GAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGT 72095 | ||| || |||||||| || | ||||| ||| | | || || || || || || Sbjct 2021 CAAATCTGGGATCCAAAGGGCGAAAAATAAATCACGAGCCCTTCCTTCTTCCTTGCCCGT 2080 Query 72096 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 72155 ||| || || | || |||||| | | || || ||||| ||||| | || ||||| Sbjct 2081 ATTTTTCTTCAAGTCTAGGAACTCGAAAACGTCCCCGTGCCAAGGTTCAAGATAAATGGC 2140 Query 72156 CATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 72215 | | | || || | || || || ||||| || | ||| | ||| || || || || || Sbjct 2141 AAAAGCGCCAGGTCTCTTATTACCACCCTGGTCCACGTAACGAGCCGTATTGTTGTACAC 2200 Query 72216 TCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACT 72275 || ||||||||| | | ||||| || || || || |||| |||||| |||| | Sbjct 2201 TCGCAACATTGGTACTAGGCCATTTGAAATGCCGTTAGTACCGGCGATATAAGTTCCCTT 2260 Query 72276 GGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCA 72335 ||| |||||| | || ||| || ||||| ||||| |||||| | || || || Sbjct 2261 GGCCCGAATACAGTGAACATTTAGGCCAATTCCGCCTGCAGATTTAGATACTAGCGCACA 2320 Query 72336 TCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCAT-GTTAAGTAGAAAAC 72394 | || || ||||| || |||||||| ||||||||||| |||| || || |||| Sbjct 2321 CTGCTTCAAGGTATCGTAAATGCCCTCAATACTATCATCACTCATCGTCAATAAGAAGCA 2380 Query 72395 AGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAA 72454 || | |||| || ||||| || |||| ||| || ||||| || || || || | Sbjct 2381 AGAT-GACAACTGAGGACGAGGGGTGGCCGCTGCAAACAATGTAGGCGACGCATGAGTGA 2439 Query 72455 ACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTA 72514 | | |||||||| || || ||||||||||| || || || || ||| ||| | Sbjct 2440 AATAACGTTCAGACAACAGGTTATACGTCTCAATGGCAGAGTCAATGTCCTCCCCATGAA 2499 Query 72515 TTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTT 72574 | ||||| || || | ||| ||||||||||| || | || || | || || || | Sbjct 2500 TGCCTACAGCTACTCTCATCAACATATGCTGTGGACGCTCCACAACTTTCCCCTTAATCT 2559 Query 72575 TCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTT 72634 ||||||| || ||| |||||| ||||| || || ||||| ||||| ||| || || | Sbjct 2560 TCAACAAATAAGATCGTTCCAAGGTTTTGAAGCCGAAATAATTGTAGCCAAAATCACGAT 2619 Query 72635 CGTAAATAATAACCGAATT 72653 ||||||| || ||||||| Sbjct 2620 CGTAAATGATGGCCGAATT 2638 >seq1270 Length=21014 Score = 185 bits (204), Expect = 1e-41 Identities = 369/542 (68%), Gaps = 5/542 (1%) Strand=Plus/Minus Query 41774 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTT 41833 || || ||||| || || |||||||| ||||| ||||| ||||| | ||| ||| | Sbjct 10759 TTCTGATATTCGCCGACTTTCTTTTCGAAGAAATTCGTCTTGCCTTCTAGTGAAATAGAT 10700 Query 41834 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTC-AGAAAT 41892 |||||||||| || ||||| || || |||||| | | ||||||||| | ||| Sbjct 10699 TCCATGAAATTGAATGGATTTTTAGTGTTGTAAATTCGTCCGACTCCCAATTCTATCAAT 10640 Query 41893 CAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 41952 | ||| || || | |||||| |||||| | ||| | || |||||||| || | | Sbjct 10639 -AGTCTGTCAGCAACGAATTCAATATATTCTGACATAAGTTTGCAATTCATGCCAAGCAT 10581 Query 41953 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 42012 | |||||| | || | || | ||||| |||||||| || || || ||||| Sbjct 10580 ATCAACTGGTAAGGCATCTGTTAAGAATTCCTGTTCAATTTCAACAGCTTCACGGATAAT 10521 Query 42013 AGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAA 42072 | | | |||||| | ||| | | ||| | ||||| | || || || Sbjct 10520 TTCGATGATTCTTTCTTTTGTTGGTTTCTGGACTAAGTAACGGAACATAAGGCAGGCAAA 10461 Query 42073 ATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCAT 42132 |||||||| | || ||||| | | ||| | |||||| || || || || || ||||| Sbjct 10460 GTCGCAGTGTAATCCTTCATCACGAGAAATGAGTTCGTTTGAGAATGTCAGACCAGGCAT 10401 Query 42133 TAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTC 42192 |||||||| || |||||||| || || || ||||| ||| ||||| |||||||| Sbjct 10400 AAGGCCACGTTTCTTAAGCCAGAAAATGGAAGCAAAACTTCCGCTGAAGAAAATTCCTTC 10341 Query 42193 TACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCA-TG--TATCCACTT 42249 || || ||||| || |||| | ||||| ||| ||| | | | || |||||| | Sbjct 10340 GACGGCAGCAAATGCTATAATGCGTTCTCCGTAATTGGCGTTCTGACTGCATATCCATTG 10281 Query 42250 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATA 42309 ||||||||||||||||||||| ||||| || | || || | ||||| || |||| Sbjct 10280 AATAGCCCAATCGGCCTTCTTTTTGACACATGGAAGGGTCTCAACTGCATTGAATAGATG 10221 Query 42310 GT 42311 || Sbjct 10220 GT 10219 Score = 87.8 bits (96), Expect = 2e-12 Identities = 126/178 (71%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 42419 ACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCT 42478 ||||| ||||| | ||| |||||| | ||||| ||||| || || ||||| ||| Sbjct 7290 ACCTGAACTTCCTGGCTAAAACGTTCAACCAAATTCTCGTTAACAATGCCGTCTGATGCT 7231 Query 42479 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAA 42538 |||||||| ||||| || || || |||| |||| || | ||| | | ||| Sbjct 7230 GCAAAAAAGGCCAAAACGTGAGAAATGAAATGCCTTTCACTTGGCTTCAATGTTTCCCAG 7171 Query 42539 TCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCT 42596 || || ||||||||||| | || || ||||| || ||||| || || ||||| |||| Sbjct 7170 TCTTTCATATCTTTAGAAAGGTCGACCTCTTCAACGGTCCAGAACGAGGCTTCAGCCT 7113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670461710145320