Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq71022 190 2e-43 seq25532 127 2e-24 seq36344 123 3e-23 seq144 113 5e-20 seq31860 100 3e-16 >seq71022 Length=3779 Score = 190 bits (210), Expect = 2e-43 Identities = 730/1132 (64%), Gaps = 26/1132 (2%) Strand=Plus/Plus Query 156494 TTGACAACTTGAAATTCGCCCGACAAAACACGTC--TCAAAAACAAATTACTGTGAAACG 156551 |||||||| || ||||| ||||| | ||||||| | | || | | |||| || | Sbjct 1119 TTGACAACCTGGAATTCACCCGATAGGACACGTCGATTGTAGACGTTTGA-TGTGTAA-G 1176 Query 156552 GTTCAAATGACTCGTTGTTGTTGAGTATTTGTGCGGTCGTGGCCGTCGGCATGTACGCCA 156611 |||||||||| || ||||| ||| |||||||| |||| || || ||||| |||| Sbjct 1177 GTTCAAATGATTCATTGTTTCCGAGAATTTGTGCAGTCGAAGCGGTTGGCATTGGTGCCA 1236 Query 156612 CAAGCAATGAATTACGTAATCCGTATTTTTGTATATTTATT-TTCAACTGTGACCAGTCC 156670 ||| | ||||| | | || | | |||| | | ||| | ||||| | ||| | | Sbjct 1237 AAAGTAGGGAATTTC-TGATACCTGTTTTGGCAATTTTCTGCTTCAATTCATCCCAATTC 1295 Query 156671 CATAACGAAGTCGGTACCGTATTCCACAAATCGTATTGCAATATTCCTTCGCTCGCTTTG 156730 ||||| || ||| | | ||||| || || ||||| || |||| || || | Sbjct 1296 CATAAATCTGTTGGTTTTTTGTCCCACATGTCATACTGCAAAATGCCTTTACTAACTGGG 1355 Query 156731 CTACCGGCAAACGTGCTATAAG-GC--TCACTAACAGATGCCAGTTCGTAACTGGCCTCG 156787 | || || | || ||| | || ||| | | | ||| ||| ||| || || Sbjct 1356 CAGCCTTCATAAGTCTCATAGGTGCCTTCAATTTCGG---CCAATTCAGTACTAGCTTCC 1412 Query 156788 AGCGCAGCATGATACACAGTTTCAGCAATTTGTTTATTCAATAGAACGGCAGCATCGCTC 156847 | ||| ||| ||| | || || |||||||| ||||||| ||| | |||||| Sbjct 1413 AAGGCACCATAATAAATCGTCTCGAAAATTTGTTGGTTCAATAATTGGGCTTCTTCGCTC 1472 Query 156848 ACGTACGGTATGCGCAACATAACAAATGCATCGGCCAAACCTTGAATGCCAATGCCGATG 156907 |||| || |||| | | ||||||||| |||| || |||| |||||| || ||| Sbjct 1473 TCGTAAGGGTAACGCATTAGGATAAATGCATCAGCCATGCCCTGAACGCCAATTCCAATG 1532 Query 156908 GGACGATGGCGCATATTAGAtttttttGCAGTTTCAATAGGGTAGAAATTGCGATCAATA 156967 |||||||| | |||||| ||| || | || | || || || || ||| |||||| Sbjct 1533 GGACGATGTCTCATATTCGATGTTCTAGCTTCTGGGATCGGATAAAAGTTGACATCAATG 1592 Query 156968 ATTTTATTCAAACTATCCACTACATGTTTGACCACAGTGTGCAATAGTTGAAAATCAAAA 157027 |||||||||||| | | | ||| ||| || | |||| | |||||||| Sbjct 1593 ATTTTATTCAAATTTTTCGTTACGGTTTTTGTGACTTCTTTCAATTTCTTGAAATCAAAC 1652 Query 157028 G---TATCATTATTGATATATTTATTGACGGCAATCGACGCTAGATTACATACGGCAGTT 157084 | | |||||| | | | | |||| | |||||| || || | |||||| |||||| | Sbjct 1653 GTTTTTTCATTAGTAACAAACATATTCAAGGCAATTGAGGCCAAATTACAGACGGCAACT 1712 Query 157085 TCGTCGGGCGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCATTTTATCAATCCG 157144 || || |||||| || || || | |||||| ||||||||||| || ||| Sbjct 1713 TCATCTTTACTTGAATATTCGACAATCTCTGTACACAAGTTGCTGCATTTAATGGTTCCA 1772 Query 157145 CAATTACTTTGATTGCTTTTGCGGTTGCAAGCGTCCTTGTATAACATGTACGGTGTGCCG 157204 ||| ||| || ||| | ||| |||||||| ||||| | ||| || || || || Sbjct 1773 ATATTTTGTTGGTTAGATTTTCTGTTACAAGCGTCTTTGTAGAGCATATAAGGCGTACCC 1832 Query 157205 GTTTCGGCTTGAATTTCTATGATGTTGCGCATTA-ATGTAACCGCGGGCATTTGCTCGCG 157263 ||||| ||||| ||| || ||| || | | | || || | | | || ||| Sbjct 1833 GTTTCAACTTGAGATTCAATAATG--GCAAACCAGAGGT--CCTGTGCCTTAATCTGGCG 1888 Query 157264 ---AAACTGGCCTTTATCCTCGTAATGTTTGTACCAGTATTCAAAGTCATCACCATACGT 157320 ||| | |||| | || || ||| ||||| | | |||||| || ||||| | || Sbjct 1889 AATAAAACGACCTTCTTTTTCATATTGTGTGTACAATTTTTCAAACTCCTCACCCCATGT 1948 Query 157321 ATCGTTGAGCTTAGGACACTCGTTAGGACACATTAATGACCATATACCGTTTTCTTCAAC 157380 |||| || ||| ||||| | ||| ||||| || ||| || | || || || Sbjct 1949 GTCGTGTAGACCAGGGCACTCATGAGGGCACATCAAACTCCACATTTCATTAGACTCGAC 2008 Query 157381 GCGTTTCATAAATATATCGGGAACCCATAAAGCGTTCATCAAATCACGCGCTTTGGTGTC 157440 | || |||||| | ||| || | ||| | ||| | |||||||| || | || Sbjct 2009 CCTTTGCATAAACAAATCTGGGATCCAAAGGGCGAAAAATAAATCACGAGCCCTTCCTTC 2068 Query 157441 TTCGCTGCCAATGTTTCGACGCATGTGTAAAACGTCCATAATGTCGCAATGCCACGGTTC 157500 ||| |||| | ||| || || || | || | || ||| | ||||| ||||| Sbjct 2069 TTCCTTGCCCGTATTTTTCTTCAAGTCTAGGAACTCGAAAACGTCCCCGTGCCAAGGTTC 2128 Query 157501 AACGTACACTGCTTGGGCTCCTTTTCGC---TTGCCACCTTGATCCACGTGACGCACCAT 157557 || || | || || || || | || ||||| || ||||||| ||| || | Sbjct 2129 AAGATAAATGGCAAAAGCGCCAGGTCTCTTATTACCACCCTGGTCCACGTAACGAGCCGT 2188 Query 157558 ATTATTAAAAACTCGCAGCATTGGTAGCAGTCCGCTGGCGGTGCCGTTCGTA 157609 ||| || | ||||||| |||||||| || || | | ||||||| ||| Sbjct 2189 ATTGTTGTACACTCGCAACATTGGTACTAGGCCATTTGAAATGCCGTTAGTA 2240 >seq25532 Length=5913 Score = 127 bits (140), Expect = 2e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 142975 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 143034 ||| || || | |||||| ||||| || || |||||||| | || ||| || | |||||| Sbjct 935 AACCAAGTGCAATGTAGACTCTTTCTGGATATTGTAATCACCCAATGTCCTAGCGTCTTC 994 Query 143035 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 143094 | |||||| |||||| | |||| | ||| ||||| || || ||||||||||| || Sbjct 995 CAATTGTTTGCCAGCAAAAATCAATCTTTGTTGATCTGGTGGGATGCCTTCTTTATCCTG 1054 Query 143095 AATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTT 143154 |||||| || | ||| | |||||| | | || ||||||| || | ||||| Sbjct 1055 AATTTTACCCTTGACACTTTCAATCGTGTCGGCTGCCTCAACTTCAAGCGTTATTGTCTT 1114 Query 143155 GCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || ||||||||||| ||||| |||||||| Sbjct 1115 TCCTGTCAATGTTTTAACGAAAATTTGCAT 1144 >seq36344 Length=11671 Score = 123 bits (136), Expect = 3e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 142955 TGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCG 143014 || || || || | ||| | || ||||| | ||| ||||| || || |||||||| ||| Sbjct 905 TGACCACCACGGAGACGGAGGACCAAATGCAATGTTGATTCCTTCTGGATGTTGTAGTCG 846 Query 143015 CTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 143074 || || | |||||||||||| || |||||| | |||| |||||| || || || Sbjct 845 GACAAGGTACGTCCGTCTTCGAGTTGCTTGCCAGCAAAAATCAAACGTTGTTGGTCTGGG 786 Query 143075 GGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCT 143134 || || ||||||||||| |||||| ||||| | || | ||||| | ||||| Sbjct 785 GGGATTCCTTCTTTGTCTTGAATTTTAGCTTTTACATTCTCAATTGTGTCTGACGGTTCG 726 Query 143135 ACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 ||||| | || | || || || ||||| || || ||||||||||||||| Sbjct 725 ACTTCCAATGTAATAGTTTTTCCAGTCAAAGTCTTGACGAATATTTGCATA 675 >seq144 Length=14776 Score = 113 bits (124), Expect = 5e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | || ||||| | ||||| ||||| || |||||||| || | Sbjct 13540 CCACCACGGAGACGAAGGACCAAATGCAAAGTAGACTCTTTCTGAATGTTGTAGTCAGAC 13481 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || | || | ||||| | |||||| ||||| | |||| ||| |||||||| ||||| Sbjct 13480 AAAGTACGTCCA-TCTTCCAATTGTTTTCCAGCGAAAATCAAACGCTGCTGATCTGGAGG 13422 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||||||||| || || ||| | | ||| | || |||| ||||| || Sbjct 13421 AATACCTTCTTTGTCTTGGATCTTAGCTTTCACGTTTTCAATAGTATCCGAAGGTTCGAC 13362 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 ||| | || | ||| || ||||| || ||||| ||||| ||||||||| Sbjct 13361 TTCCAATGTGATCGTTTTTCCGGTTAAGGTTTTGACGAAAATTTGCATA 13313 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | || ||||| | ||| || ||||| || ||||| ||||| | Sbjct 13200 CCACCACGGAGACGGAGGACCAAATGCAATGTCGACTCTTTCTGAATGTTATAATCTGAC 13141 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || | || | ||||| | |||||| |||||| |||||| |||||||||||| || || Sbjct 13140 AGGGTACGTCCA-TCTTCCAATTGTTTTCCAGCAAAGATCAAACGTTGCTGATCTGGGGG 13082 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||| || || ||| || ||| | | ||| | ||||| | || || || Sbjct 13081 GATACCTTCCTTATCTTGAATCTTGGCTTTAACGTTTTCAATGGTGTCGGAAGGCTCAAC 13022 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | ||||| || ||||| || || ||||| |||||||| Sbjct 13021 CTCCAATGTAATGGTCTTTCCAGTCAACGTCTTGACGAAAATTTGCAT 12974 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | || ||||| | ||| || || ||||| |||||||| || | Sbjct 13768 CCACCACGGAGACGGAGGACCAAATGCAATGTCGACTCCTTTTGAATGTTGTAGTCTGAC 13709 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || | || | ||||| | ||| || ||||| | || |||||||| ||||| ||||| Sbjct 13708 AAGGTACGTCCA-TCTTCCAATTGCTTTCCAGCGAAAATGAGACGTTGTTGATCTGGAGG 13650 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||||||||| || || || | | ||| | || |||| ||| || || Sbjct 13649 AATACCTTCTTTGTCTTGGATCTTGGCCTTAACGTTTTCAATAGTATCCGAGGGCTCGAC 13590 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 ||| | ||| | || || || ||||||||||| || || || |||||| Sbjct 13589 TTCCAAAGTGATGGTTTTTCCTGTCAATGTTTTAACAAAAATCTGCATA 13541 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | || ||||| | ||| || || ||||| || ||||| ||| | Sbjct 14680 CCACCACGGAGACGGAGGACCAAATGCAATGTCGACTCCTTTTGAATATTGTAGTCGGAC 14621 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| ||||| | ||||||||| || | |||| ||| |||||||| ||||| Sbjct 14620 AAAGTGCGGCCATCTTCCAATTGTTTACCGGCGAAAATCAAACGCTGCTGATCTGGAGGA 14561 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||||||||| || || || | | ||| | || || | ||| || ||| Sbjct 14560 ATACCTTCTTTGTCCTGGATCTTGGCCTTAACGTTTTCAATGGTATCTGAGGGCTCAACT 14501 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | || ||||| ||||| ||||| ||||| || ||||| Sbjct 14500 TCCAAGGTGATAGTTTTGCCAGTCAAAGTTTTAACGAAAATCTGCAT 14454 >seq31860 Length=14314 Score = 100 bits (110), Expect = 3e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 143035 || ||||| | ||| || |||||||| |||||||| ||||| | ||| | ||||| Sbjct 1270 ACCAAATGCAATGTGGACTCTTTTTGAATGTTGTAGTCGCTAAGTGTTTTGCCATCTTCC 1211 Query 143036 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 143095 | |||||| |||||| | |||| | ||||||||| || || ||||||||||| || | Sbjct 1210 AATTGTTTGCCAGCAAAAATCAATCTTTGCTGATCTGGTGGGATGCCTTCTTTATCCTGA 1151 Query 143096 ATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTG 143155 || || ||| | | ||| | | || | | || |||||| || | || || Sbjct 1150 ATCTTCAATTTGACATTTTCAATAGAATCTGAGCCCTCAGCTTCAAGTGTTATTGTTTTT 1091 Query 143156 CCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 ||||| | ||||| | ||||||||||||| || Sbjct 1090 CCGGTTAGGGTTTTAATGAATATTTGCATACCT 1058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506502587976240