Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq71022 98.7 1e-15 seq41364 89.7 8e-13 >seq71022 Length=3779 Score = 98.7 bits (108), Expect = 1e-15 Identities = 159/227 (70%), Gaps = 4/227 (2%) Strand=Plus/Minus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAAT--GTCAC 96864 || ||||||| | | ||||||||| |||||| | || ||||||| |||| | | | Sbjct 2239 ACTAACGGCATTTCAAATGGCCTAGTACCAATGTTGCGAGTGTACAA--CAATACGGCTC 2182 Query 96865 GATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTT 96924 | ||||| ||||| || ||||| | || |||||| | ||| | || | ||||||| Sbjct 2181 GTTACGTGGACCAGGGTGGTAATAAGAGACCTGGCGCTTTTGCCATTTATCTTGAACCTT 2122 Query 96925 GGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCAC 96984 |||||| ||||||||| || || | || || ||||| | ||| ||||| | | Sbjct 2121 GGCACGGGGACGTTTTCGAGTTCCTAGACTTGAAGAAAAATACGGGCAAGGAAGAAGGAA 2062 Query 96985 GAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATG 97031 | || | || || |||| || || ||| | ||||||||||| ||| Sbjct 2061 GGGCTCGTGATTTATTTTTCGCCCTTTGGATCCCAGATTTGTTTATG 2015 >seq41364 Length=3858 Score = 89.7 bits (98), Expect = 8e-13 Identities = 139/196 (71%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 70331 GCCGACATGGGCCTCGGTGTACCCTTTAACATTGCAAGCTATTCTATGTTGACGCACATG 70390 |||||||||||||| || || || || || || || || || | || |||| ||||| Sbjct 2359 GCCGACATGGGCCTTGGAGTTCCATTCAATATCGCCAGTTACGCCTTGCTGACCTACATG 2418 Query 70391 ATTGCTCACATTACCGGCCTGAAAGCGCACGAGTTCGTACACACCATTGGCGACGCTCAC 70450 |||||||| | ||||| || | | ||| || || ||||| ||||| || | ||| Sbjct 2419 ATTGCTCATGTCACCGGACTTACCCCCGGCGATTTTGTCCACACTATTGGGGATACCCAC 2478 Query 70451 GTGTATTTAAATCACATCGAGCCATTAAAGGTGCAACTCGAACGGGA-GCCGAGACCTTT 70509 || ||||| ||||| | || || ||||||| ||| | || | ||| |||||| || Sbjct 2479 GTCTATTTGAATCATGTTGAACCGTTAAAGGAACAA-TTGACCCGGACACCGAGAAAATT 2537 Query 70510 TCCCAAGCTGGAGTTT 70525 ||| | |||| | ||| Sbjct 2538 TCCTACGCTGCATTTT 2553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740311128527320