Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq144 131 1e-25 seq25532 122 6e-23 seq3660 111 1e-19 seq36344 107 1e-18 seq31860 100 2e-16 >seq144 Length=14776 Score = 131 bits (144), Expect = 1e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||||||| | || || || || || || || |||||||| || ||||||||| | Sbjct 10773 CCACCTCTCAAGCGTAGGACCAAGTGTAGCGTCGATTCTTTTTGAATATTGTAATCGGAT 10714 Query 15197 AGAAT-TCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGG 15255 || | | || | ||||| ||||| || |||||| | || | |||||||| || ||| Sbjct 10713 AGGGTATGTC-CATCTTCCAATTGCTTTCCAGCGAAAATGAGGCGTTGTTGATCTGGTGG 10655 Query 15256 AATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 |||||||| || || ||| ||| | || | | |||| |||| ||| ||| || Sbjct 10654 GATTCCTTCCTTATCTTGAATCTTGGTTTTAATATTTTCAATGGAATCAGACCCTTCAAC 10595 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||||| || ||||||||||| |||| ||||| ||||| ||||||||| Sbjct 10594 TTCTAAAGTTATGGTTTTACCGGTCAATGTTTTGACAAAGATTTGCATA 10546 Score = 122 bits (134), Expect = 6e-23 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 15173 TCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTAT 15232 |||||||| |||||||| || ||| | | ||||||| ||||| || |||||| | Sbjct 7512 TCTTTTTGAATGTTGTAGTCAGATAGGGTACGTCCGTCTTCCAATTGCTTTCCAGCGAAA 7571 Query 15233 ATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATT 15292 || | |||||||| || ||||||||||| || || ||| ||| ||| ||| | Sbjct 7572 ATGAGGCGTTGTTGATCTGGAGGAATTCCTTCCTTATCTTGAATCTTGGCCTTAACATTC 7631 Query 15293 TCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACA 15352 || |||| ||| | ||| || |||||||| ||||||||||| |||| ||||| ||| Sbjct 7632 TCAATGGAATCAGAACCTTCAACTTCTAAGGTTATGGTTTTACCGGTCAATGTTTTGACA 7691 Query 15353 AAAATTTGCATA 15364 || ||||||||| Sbjct 7692 AAGATTTGCATA 7703 Score = 98.7 bits (108), Expect = 7e-16 Identities = 150/212 (71%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCG--CGTCTT 15212 || ||||| | || || || ||||| |||||||| || | | || || | |||| Sbjct 13750 ACCAAATGCAATGTCGACTCCTTTTGAATGTTGTAGTC--TGACAAGGTACGTCCATCTT 13693 Query 15213 CTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCAC 15272 | ||||| || |||||| | || | ||||||||| || ||||| ||||||||||| Sbjct 13692 CCAATTGCTTTCCAGCGAAAATGAGACGTTGTTGATCTGGAGGAATACCTTCTTTGTCTT 13633 Query 15273 AAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTT 15332 || ||| ||| || |||| || ||||| || || || || || ||||||| Sbjct 13632 GGATCTTGGCCTTAACGTTTTCAATAGTATCCGAGGGCTCGACTTCCAAAGTGATGGTTT 13573 Query 15333 TACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 | ||||||| ||||| |||||||| |||||| Sbjct 13572 TTCCTGTCAATGTTTTAACAAAAATCTGCATA 13541 Score = 98.7 bits (108), Expect = 7e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || ||||| | || || || ||||| || ||||| ||| | | | | | ||||| Sbjct 14662 ACCAAATGCAATGTCGACTCCTTTTGAATATTGTAGTCGGACAAAGTGCGGCCATCTTCC 14603 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 |||||||| || ||| | |||||||| || || || ||||| ||||||||||| Sbjct 14602 AATTGTTTACCGGCGAAAATCAAACGCTGCTGATCTGGAGGAATACCTTCTTTGTCCTGG 14543 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| ||| || |||| |||||||| || || || ||||| || ||||| Sbjct 14542 ATCTTGGCCTTAACGTTTTCAATGGTATCTGAGGGCTCAACTTCCAAGGTGATAGTTTTG 14483 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || |||| |||||| || ||||| ||||| Sbjct 14482 CCAGTCAAAGTTTTAACGAAAATCTGCAT 14454 Score = 95.1 bits (104), Expect = 9e-15 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || ||||| | || || ||||| || |||||||| || | | | | | ||||| Sbjct 13522 ACCAAATGCAAAGTAGACTCTTTCTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCC 13463 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 |||||||| |||||| | |||||||| || || || ||||| ||||||||||| Sbjct 13462 AATTGTTTTCCAGCGAAAATCAAACGCTGCTGATCTGGAGGAATACCTTCTTTGTCTTGG 13403 Query 15275 ATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || || ||| || || |||| || ||||| | ||| || || || || || ||||| Sbjct 13402 ATCTTAGCT-TTCACGTTTTCAATAGTATCCGAAGGTTCGACTTCCAATGTGATCGTTTT 13344 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || | ||||| || |||||||||||| Sbjct 13343 TCCGGTTAAGGTTTTGACGAAAATTTGCATA 13313 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || ||||| | || || ||||| || ||||| ||||| || | | | ||||| Sbjct 13182 ACCAAATGCAATGTCGACTCTTTCTGAATGTTATAATCTGACAGGGTACGTCCATCTTCC 13123 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 |||||||| ||||| | ||||||||||| || || || || ||||| || || | Sbjct 13122 AATTGTTTTCCAGCAAAGATCAAACGTTGCTGATCTGGGGGGATACCTTCCTTATCTTGA 13063 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| || || |||| ||||| ||| | || || || || |||||||| || Sbjct 13062 ATCTTGGCTTTAACGTTTTCAATGGTGTCGGAAGGCTCAACCTCCAATGTAATGGTCTTT 13003 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || |||| || || || ||||||||||| Sbjct 13002 CCAGTCAACGTCTTGACGAAAATTTGCAT 12974 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || ||||| | || || || ||||| || ||||| || | | | | | |||||| Sbjct 13978 ACCAAATGCAATGTCGACTCCTTTTGGATATTGTAGTCAGACAAAGTACGGCCATCTTCT 13919 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 |||||||| || ||| | |||||||| ||||| || ||| || ||||| || || Sbjct 13918 AATTGTTTTCCTGCGAAAATCAAACGCTGTTGATCTGGTGGGATACCTTCCTTATCCTGG 13859 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| ||| || | || |||||||| || || || ||||| |||||||| Sbjct 13858 ATCTTGGCCTTAACGTTCTCGATGGTATCCGAGGGCTCGACTTCCAAGGTGATGGTTTTG 13799 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || |||| || || || || ||||||||| Sbjct 13798 CCAGTCAATGTCTTGACGAAGATTTGCATA 13769 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCG--CGTCTT 15212 || ||||| | || || || ||||| || ||||| || | | ||| || | |||| Sbjct 14434 ACCAAATGCAATGTCGACTCCTTTTGGATATTGTAGTC--TGACAATGTACGGCCATCTT 14377 Query 15213 CTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCAC 15272 ||||||||||||| || | |||||||| ||||| || || || ||||| || || Sbjct 14376 CTAATTGTTTGCCGGCAAAAATCAAACGCTGTTGATCTGGAGGGATACCTTCCTTATCTT 14317 Query 15273 AAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 |||||| ||| || ||| |||| || || || || || || ||||| |||||| Sbjct 14316 GAATTTTAGCT-TTAACATTTTCGATTGTGTCCGAGGGCTCGACTTCCAAGGTGATGGTT 14258 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || | ||||| || || |||||||| Sbjct 14257 TTGCCAGTTAAGGTTTTCACGAAGATTTGCAT 14226 >seq25532 Length=5913 Score = 122 bits (134), Expect = 6e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | |||||| | ||| || || | || || ||||| || || |||||||| | Sbjct 918 CCACCGCGCAATCTGAGAACCAAGTGCAATGTAGACTCTTTCTGGATATTGTAATCACCC 977 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | || |||||||| |||||||||||||| | ||||| | |||||| || ||| Sbjct 978 AATGTCCTAGCGTCTTCCAATTGTTTGCCAGCAAAAATCAATCTTTGTTGATCTGGTGGG 1037 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || |||||||| || |||||| | ||| ||| |||| || || ||| || || Sbjct 1038 ATGCCTTCTTTATCCTGAATTTTACCCTTGACACTTTCAATCGTGTCGGCTGCCTCAACT 1097 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | || || || || ||||||| ||||| || ||||||||||| Sbjct 1098 TCAAGCGTTATTGTCTTTCCTGTCAATGTTTTAACGAAAATTTGCAT 1144 >seq3660 Length=14069 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || ||||| | || || || ||||| |||||||| |||| | |||| | ||||| Sbjct 2499 ACCAAATGCAATGTCGATTCCTTTTGAATGTTGTAGTCGCCCAATGTTCTGCCATCTTCC 2440 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 |||||||||||||| | ||||| |||||||| || ||| |||||||| || || | Sbjct 2439 AATTGTTTGCCAGCAAAAATCAAGCGTTGTTGATCTGGTGGGATTCCTTCCTTCTCTTGA 2380 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || || ||| ||| |||| || ||||| | ||| || || || || || || || Sbjct 2379 ATCTTAGCCTTGACATTTTCAATAGTATCCGAAGCTTCAACTTCCAATGTGATTGTCTTT 2320 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || |||| ||| || || || |||||||| Sbjct 2319 CCAGTCAAAGTCTTGACGAAGATTTGCAT 2291 >seq36344 Length=11671 Score = 107 bits (118), Expect = 1e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || ||||| | || || || || || |||||||| ||| | | | ||||||| Sbjct 884 ACCAAATGCAATGTTGATTCCTTCTGGATGTTGTAGTCGGACAAGGTACGTCCGTCTTCG 825 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | ||| |||||||| | ||||||||||||||||| || |||||||||||||| | Sbjct 824 AGTTGCTTGCCAGCAAAAATCAAACGTTGTTGGTCTGGGGGGATTCCTTCTTTGTCTTGA 765 Query 15275 ATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 ||||| ||| |||||| | || || || || ||| || || || ||||| ||||| Sbjct 764 ATTTTAGCT-TTTACATTCTCAATTGTGTCTGACGGTTCGACTTCCAATGTAATAGTTTT 706 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || |||| ||| || || || ||||||||| Sbjct 705 TCCAGTCAAAGTCTTGACGAATATTTGCATA 675 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || ||||| || || |||||||| || ||||| || | | | | | |||||| Sbjct 656 ACCAAGTGAAGCGTAGATTCTTTTTGAATATTGTAGTCAGACAAAGTACGGCCATCTTCT 597 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 |||||||| || ||| | |||||||| ||||| || |||||| ||||| || || Sbjct 596 AATTGTTTTCCGGCGAAAATCAAACGCTGTTGATCTGGTGGAATACCTTCCTTATCCTGG 537 Query 15275 ATTTTGCTCTTTACAATTTCTATGGT 15300 || ||| ||||||| |||| ||||| Sbjct 536 ATCTTGGCCTTTACATTTTCAATGGT 511 >seq31860 Length=14314 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || || | |||||||| || ||||| | ||||| |||||||| |||||||| ||||| Sbjct 1288 CCGCCGCGCAATCTTAGGACCAAATGCAATGTGGACTCTTTTTGAATGTTGTAGTCGCTA 1229 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || || | | ||||| |||||||||||||| | ||||| | ||| || || ||| Sbjct 1228 AGTGTTTTGCCATCTTCCAATTGTTTGCCAGCAAAAATCAATCTTTGCTGATCTGGTGGG 1169 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || |||||||| || ||| || || ||| |||| || | ||| || | Sbjct 1168 ATGCCTTCTTTATCCTGAATCTTCAATTTGACATTTTCAATAGAATCTGAGCCCTCAGCT 1109 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || | || || ||||| || || || ||||| | || ||||||||| Sbjct 1108 TCAAGTGTTATTGTTTTTCCGGTTAGGGTTTTAATGAATATTTGCATA 1061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361822733837337