Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq144 127 1e-24 seq36344 111 1e-19 seq25532 109 3e-19 seq31860 100 2e-16 seq3660 82.4 5e-11 >seq144 Length=14776 Score = 127 bits (140), Expect = 1e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 ||||||||||||||||||||||| || || || ||||| |||| | || || ||| Sbjct 13182 ACCAAATGCAATGTCGACTCTTTCTGAATGTTATAATCTGACAGGGTACGTCCATCTTCC 13123 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 ||||| |||||| ||| || ||||||||||| || | ||| || ||||| || || | Sbjct 13122 AATTGTTTTCCAGCAAAGATCAAACGTTGCTGATCTGGGGGGATACCTTCCTTATCTTGA 13063 Query 33281 ATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTT 33340 ||| ||| || ||| ||| |||||| || | ||| |||| || || || ||| Sbjct 13062 ATCTTGGCTTTAACGTTTTCAATGGTGTCGGAAGGCTCAACCTCCAATGTAATGGTCTTT 13003 Query 33341 CCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || || | || || ||||||||||||||| Sbjct 13002 CCAGTCAACGTCTTGACGAAAATTTGCATG 12973 Score = 123 bits (136), Expect = 2e-23 Identities = 156/213 (73%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 |||||||||||||||||||||||||| |||||||| |||||||| || | || ||| Sbjct 14206 ACCAAATGCAATGTCGACTCTTTTTGGATATTGTAGTCAGACAATGTGCGGCCATCTTCC 14147 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 |||||||||||| || || ||||| || || || | || |||||||| || || | Sbjct 14146 AATTGCTTTCCAGCGAAAATCAAACGCTGTTGATCTGGAGGGATGCCTTCCTTATCTTGA 14087 Query 33281 A---TCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTT 33337 | | ||| ||||| ||| ||| || || ||| | || |||| || || ||| Sbjct 14086 ATTTTAGCC---TTTACATTTTCAATGGTATCCGAGGGCTCGACTTCCAAGGTGATGGTT 14030 Query 33338 TTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || || || | ||||| ||||| ||||||||| Sbjct 14029 TTGCCAGTTAAGGTTTTCACGAAGATTTGCATG 13997 Score = 120 bits (132), Expect = 2e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 ||||||||||| || |||||||| || || ||||| ||||||||| | || || ||| Sbjct 13522 ACCAAATGCAAAGTAGACTCTTTCTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCC 13463 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 ||||| |||||| || || ||||| ||||| || | || || |||||||| || Sbjct 13462 AATTGTTTTCCAGCGAAAATCAAACGCTGCTGATCTGGAGGAATACCTTCTTTGTCTTGG 13403 Query 33281 ATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTT 33340 ||| ||| || ||| ||| || || |||| || |||| || ||||||||| Sbjct 13402 ATCTTAGCTTTCACGTTTTCAATAGTATCCGAAGGTTCGACTTCCAATGTGATCGTTTTT 13343 Query 33341 CCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || | ||||| |||||||||||||| Sbjct 13342 CCGGTTAAGGTTTTGACGAAAATTTGCAT 13314 Score = 114 bits (126), Expect = 8e-21 Identities = 154/213 (72%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 |||||||||||||||||||| ||||| |||||||| || |||||| || | || ||| Sbjct 14662 ACCAAATGCAATGTCGACTCCTTTTGAATATTGTAGTCGGACAAAGTGCGGCCATCTTCC 14603 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC---G 33277 ||||| || || || || ||||| ||||| || | || || |||||||| || | Sbjct 14602 AATTGTTTACCGGCGAAAATCAAACGCTGCTGATCTGGAGGAATACCTTCTTTGTCCTGG 14543 Query 33278 CTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTT 33337 | | ||| || || ||| ||| || || ||| | ||| |||| || || ||| Sbjct 14542 ATCTTGGCC---TTAACGTTTTCAATGGTATCTGAGGGCTCAACTTCCAAGGTGATAGTT 14486 Query 33338 TTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || || || | |||||| |||||||| |||||| Sbjct 14485 TTGCCAGTCAAAGTTTTAACGAAAATCTGCATG 14453 Score = 109 bits (120), Expect = 3e-19 Identities = 152/212 (72%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 |||||||||||||||||||| ||||| || ||||| || ||||| | || || ||| Sbjct 13750 ACCAAATGCAATGTCGACTCCTTTTGAATGTTGTAGTCTGACAAGGTACGTCCATCTTCC 13691 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT---TTCG 33277 |||||||||||| || || | |||||| || || | || || |||||||| || | Sbjct 13690 AATTGCTTTCCAGCGAAAATGAGACGTTGTTGATCTGGAGGAATACCTTCTTTGTCTTGG 13631 Query 33278 CTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTT 33337 | | ||| || || ||| ||| || || ||| | || |||| ||| || ||| Sbjct 13630 ATCTTGGCC---TTAACGTTTTCAATAGTATCCGAGGGCTCGACTTCCAAAGTGATGGTT 13574 Query 33338 TTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||||| || | ||||| || ||||| ||||| Sbjct 13573 TTTCCTGTCAATGTTTTAACAAAAATCTGCAT 13542 Score = 104 bits (114), Expect = 1e-17 Identities = 153/213 (72%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 |||||||||||||| |||||||| || |||||||| || ||||| | || ||| ||| Sbjct 12954 ACCAAATGCAATGTAGACTCTTTCTGAATATTGTAGTCGGACAAGGTACGTCCGTCTTCC 12895 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC---G 33277 || ||||||||| ||| || ||||| |||||||| | || || ||||| || || | Sbjct 12894 AACTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCTGGTGGAATACCTTCCTTATCCTGG 12835 Query 33278 CTAATCGCCTGTTTTACTGTTTGAATCGTGTC-GTTGGGTTGAACGTCCAGAGTTATCGT 33336 | | ||| ||||| | | ||||| || | ||| | | || |||| ||| || || Sbjct 12834 ATCTTAGCC---TTTACGTTCTCGATCGTATCAGATGGCTCG-ACCTCCAAAGTGATGGT 12779 Query 33337 TTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || | || || ||||| || ||||| Sbjct 12778 CTTACCAGTCAATGTCTTGACGAATATCTGCAT 12746 Score = 91.5 bits (100), Expect = 9e-14 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 |||||||||||||||||||| ||||| |||||||| || ||||| | | || || Sbjct 14434 ACCAAATGCAATGTCGACTCCTTTTGGATATTGTAGTCTGACAATGTACGGCCATCTTCT 14375 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 ||||| || || ||| || ||||| || || || | || || ||||| || || | Sbjct 14374 AATTGTTTGCCGGCAAAAATCAAACGCTGTTGATCTGGAGGGATACCTTCCTTATCTTGA 14315 Query 33281 ATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTT 33340 || ||| || ||| || ||||| ||| | || |||| || || ||||| Sbjct 14314 ATTTTAGCTTTAACATTTTCGATTGTGTCCGAGGGCTCGACTTCCAAGGTGATGGTTTTG 14255 Query 33341 CCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || || | ||||| ||||| ||||||||| Sbjct 14254 CCAGTTAAGGTTTTCACGAAGATTTGCATG 14225 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| ||||| || || | ||||| || | ||||| |||||||| ||||||||||| || Sbjct 10774 ACCACCTCTCAAGCGTAGGACCAAGTGTAGCGTCGATTCTTTTTGAATATTGTAATCGGA 10715 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 | | || || ||||||||||||||| || || | ||||| || || | || Sbjct 10714 TAGGGTATGTCCATCTTCCAATTGCTTTCCAGCGAAAATGAGGCGTTGTTGATCTGGTGG 10655 Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGTTTTACT-GTTTGAATCGTGTCGTTGGGTTGAA 33320 || ||||| || || |||| |||||| | ||| ||| | || || || Sbjct 10654 GATTCCTTCCTTATCTTGAATC-TTGGTTTTAATATTTTCAATGGAATCAGACCCTTCAA 10596 Query 33321 CGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 | || | |||||| ||||| || || | ||||| || || |||||||| Sbjct 10595 CTTCTAAAGTTATGGTTTTACCGGTCAATGTTTTGACAAAGATTTGCAT 10547 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/212 (69%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 |||||||||||||||||||| ||||| |||||||| ||||||||| | | || || Sbjct 13978 ACCAAATGCAATGTCGACTCCTTTTGGATATTGTAGTCAGACAAAGTACGGCCATCTTCT 13919 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC---G 33277 ||||| ||||| || || ||||| || || || | || || ||||| || || | Sbjct 13918 AATTGTTTTCCTGCGAAAATCAAACGCTGTTGATCTGGTGGGATACCTTCCTTATCCTGG 13859 Query 33278 CTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTT 33337 | | ||| || || | | || || || ||| | || |||| || || ||| Sbjct 13858 ATCTTGGCC---TTAACGTTCTCGATGGTATCCGAGGGCTCGACTTCCAAGGTGATGGTT 13802 Query 33338 TTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || | || || ||||| |||||||| Sbjct 13801 TTGCCAGTCAATGTCTTGACGAAGATTTGCAT 13770 >seq36344 Length=11671 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 |||||||||||||| || || || || || ||||| || ||||| | || ||| || Sbjct 884 ACCAAATGCAATGTTGATTCCTTCTGGATGTTGTAGTCGGACAAGGTACGTCCGTCTTCG 825 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 | |||||| ||| ||| || |||||||| ||||| | ||| || |||||||| || | Sbjct 824 AGTTGCTTGCCAGCAAAAATCAAACGTTGTTGGTCTGGGGGGATTCCTTCTTTGTCTTGA 765 Query 33281 ATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTT 33340 || |||||| | | ||| ||||| |||| || |||| || || |||||| Sbjct 764 ATTTTAGCTTTTACATTCTCAATTGTGTCTGACGGTTCGACTTCCAATGTAATAGTTTTT 705 Query 33341 CCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || | ||| || ||||| |||||||| Sbjct 704 CCAGTCAAAGTCTTGACGAATATTTGCAT 676 >seq25532 Length=5913 Score = 109 bits (120), Expect = 3e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 ||||| |||||||| |||||||| || |||||||||||| ||| | ||| ||| Sbjct 936 ACCAAGTGCAATGTAGACTCTTTCTGGATATTGTAATCACCCAATGTCCTAGCGTCTTCC 995 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 ||||| || ||| ||| || || | ||| || || | || ||||||||||| || | Sbjct 996 AATTGTTTGCCAGCAAAAATCAATCTTTGTTGATCTGGTGGGATGCCTTCTTTATCCTGA 1055 Query 33281 ATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTT 33340 || || || ||| |||||||||| | | ||| || || ||||| || ||| Sbjct 1056 ATTTTACCCTTGACACTTTCAATCGTGTCGGCTGCCTCAACTTCAAGCGTTATTGTCTTT 1115 Query 33341 CCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || || | ||||| ||||||||||||||| Sbjct 1116 CCTGTCAATGTTTTAACGAAAATTTGCATG 1145 >seq31860 Length=14314 Score = 100 bits (110), Expect = 2e-16 Identities = 150/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTG--GTCAT 33218 |||||||||||||| ||||||||||| || ||||| || | || || ||| || | Sbjct 1270 ACCAAATGCAATGTGGACTCTTTTTGAATGTTGTAGTC--GCTAAGTGTTTTGCCATCTT 1213 Query 33219 CCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGC 33278 ||||||| || ||| ||| || || | |||||| || | || ||||||||||| || Sbjct 1212 CCAATTGTTTGCCAGCAAAAATCAATCTTTGCTGATCTGGTGGGATGCCTTCTTTATCCT 1153 Query 33279 TAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTT 33338 |||| | ||| || ||| ||| | || | | | | || || ||||| |||| Sbjct 1152 GAATCTTCAATTTGACATTTTCAATAGAATCTGAGCCCTCAGCTTCAAGTGTTATTGTTT 1093 Query 33339 TTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 |||| || || ||||| | ||| |||||||| Sbjct 1092 TTCCGGTTAGGGTTTTAATGAATATTTGCAT 1062 >seq3660 Length=14069 Score = 82.4 bits (90), Expect = 5e-11 Identities = 149/215 (69%), Gaps = 10/215 (5%) Strand=Plus/Minus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTG--GTCAT 33218 ||||||||||||||||| || ||||| || ||||| || ||| || || || | Sbjct 2499 ACCAAATGCAATGTCGATTCCTTTTGAATGTTGTAGTCGCCCAA--TGTTCTGCCATCTT 2442 Query 33219 CCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGC 33278 ||||||| || ||| ||| || || ||||| || || | || || ||||| || || Sbjct 2441 CCAATTGTTTGCCAGCAAAAATCAAGCGTTGTTGATCTGGTGGGATTCCTTCCTTCTCTT 2382 Query 33279 TAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCG 33335 |||| ||| || || ||| ||| || || | || ||| |||| || || | Sbjct 2381 GAATCTTAGCC---TTGACATTTTCAATAGTATCCGAAGCTTCAACTTCCAATGTGATTG 2325 Query 33336 TTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 | ||||| || | ||| || ||||| ||||||||| Sbjct 2324 TCTTTCCAGTCAAAGTCTTGACGAAGATTTGCATG 2290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318463850817786