Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq31860 111 1e-19 seq144 109 4e-19 seq36344 91.5 1e-13 seq25532 87.8 1e-12 seq3660 86.0 4e-12 >seq31860 Length=14314 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || || | |||||||| |||||||| | ||| |||||||||||| || || ||| | Sbjct 1288 CCGCCGCGCAATCTTAGGACCAAATGCAATGTGGACTCTTTTTGAATGTTGTAGTCGCTA 1229 Query 43955 AAT-TGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | | | || |||| ||||||||||| || ||||| ||||| | |||||| || | || Sbjct 1228 AGTGTTTTGC-CATCTTCCAATTGTTTGCCAGCAAAAATCAATCTTTGCTGATCTGGTGG 1170 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||||||||| ||| || |||||| | ||| || ||||| ||| | Sbjct 1169 GATGCCTTCTTTATCCTGAATCTTCAATTTGACATTTTCAATAGAATCTGAGCCCTCAGC 1110 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || |||||||| ||||||| || || | ||||||||||| Sbjct 1109 TTCAAGTGTTATTGTTTTTCCGGTTAGGGTTTTAATGAATATTTGCAT 1062 >seq144 Length=14776 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 |||||||| | || |||||| ||||| |||||||| | ||| |||| ||| Sbjct 13182 ACCAAATGCAATGTCGACTCTTTCTGAATGTTATAATCTGACAGGGTACGTCCATCTTCC 13123 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 ||||||||||| ||||| ||||| |||||||| || | || | |||||| |||||| | Sbjct 13122 AATTGTTTTCCAGCAAAGATCAAACGTTGCTGATCTGGGGGGATACCTTCCTTATCTTGA 13063 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 || || ||| || | ||| || || | ||||| || || | ||||| || || Sbjct 13062 ATCTTGGCTTTAACGTTTTCAATGGTGTCGGAAGGCTCAACCTCCAATGTAATGGTCTTT 13003 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || || || ||||| || || ||||||||| Sbjct 13002 CCAGTCAACGTCTTGACGAAAATTTGCATG 12973 Score = 102 bits (112), Expect = 6e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 43893 AACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGT 43952 |||| |||||||| | || ||||| |||||||| |||||||||||||| |||||| Sbjct 10775 AACCACCTCTCAAGCGTAGGACCAAGTGTAGCGTCGATTCTTTTTGAATATTGTAATCGG 10716 Query 43953 TTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAG 44012 || | | |||| |||||||| ||||| || || || | ||||| || || | | Sbjct 10715 ATAGGGTATGTCCATCTTCCAATTGCTTTCCAGCGAAAATGAGGCGTTGTTGATCTGGTG 10656 Query 44013 GTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCA 44072 | | ||||| |||||| ||| || ||| | | ||| | ||| | | || | Sbjct 10655 GGATTCCTTCCTTATCTTGAATCTTGGTTTTAATATTTTCAATGGAATCAGACCCTTCAA 10596 Query 44073 CATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | || | || || ||||||||||| || || || ||||| |||||||| Sbjct 10595 CTTCTAAAGTTATGGTTTTACCGGTCAATGTTTTGACAAAGATTTGCAT 10547 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 |||||||| | || |||||| ||||| || || || || ||| |||| ||| Sbjct 13522 ACCAAATGCAAAGTAGACTCTTTCTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCC 13463 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 ||||||||||| || || ||||| || ||||| || |||| | ||||||||| ||| Sbjct 13462 AATTGTTTTCCAGCGAAAATCAAACGCTGCTGATCTGGAGGAATACCTTCTTTGTCTTGG 13403 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 || || ||| || | ||| |||||| | || || || || | || || ||||| Sbjct 13402 ATCTTAGCTTTCACGTTTTCAATAGTATCCGAAGGTTCGACTTCCAATGTGATCGTTTTT 13343 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCAT 44121 |||||||| || || || || |||||||| Sbjct 13342 CCGGTTAAGGTTTTGACGAAAATTTGCAT 13314 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 |||||||| | || ||| ||||||||||| || ||| || || |||| ||| Sbjct 14662 ACCAAATGCAATGTCGACTCCTTTTGAATATTGTAGTCGGACAAAGTGCGGCCATCTTCC 14603 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 |||||||| || || || ||||| || ||||| || |||| | ||||||||| || Sbjct 14602 AATTGTTTACCGGCGAAAATCAAACGCTGCTGATCTGGAGGAATACCTTCTTTGTCCTGG 14543 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 || || || || | ||| ||||||| ||||| || || | || || ||||| Sbjct 14542 ATCTTGGCCTTAACGTTTTCAATGGTATCTGAGGGCTCAACTTCCAAGGTGATAGTTTTG 14483 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || || ||||| || || || || |||||| Sbjct 14482 CCAGTCAAAGTTTTAACGAAAATCTGCATG 14453 >seq36344 Length=11671 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 43967 TCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTA 44026 || || | ||| || || ||||| ||||| ||||| ||||| | || | |||||||| Sbjct 830 TCTTCGAGTTGCTTGCCAGCAAAAATCAAACGTTGTTGGTCTGGGGGGATTCCTTCTTTG 771 Query 44027 TCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATT 44086 ||| |||||| ||| || | ||| || |||| ||| || || || | ||||| Sbjct 770 TCTTGAATTTTAGCTTTTACATTCTCAATTGTGTCTGACGGTTCGACTTCCAATGTAATA 711 Query 44087 GTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||||| || || |||||||| || ||||||||||| Sbjct 710 GTTTTTCCAGTCAAAGTCTTGACGAATATTTGCAT 676 >seq25532 Length=5913 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || || | |||||| | ||||| || | || |||||| || ||||| ||||| Sbjct 918 CCACCGCGCAATCTGAGAACCAAGTGCAATGTAGACTCTTTCTGGATATTGTAATCACCC 977 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 ||| | | || ||||||||||| || ||||| ||||| | ||| || || | || Sbjct 978 AATGTCCTAGCGTCTTCCAATTGTTTGCCAGCAAAAATCAATCTTTGTTGATCTGGTGGG 1037 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | ||||||||||| |||||| ||||| | ||| || || || | ||| || Sbjct 1038 ATGCCTTCTTTATCCTGAATTTTACCCTTGACACTTTCAATCGTGTCGGCTGCCTCAACT 1097 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || | ||| ||||| || || || || || || || || ||||||||| Sbjct 1098 TCAAGCGTTATTGTCTTTCCTGTCAATGTTTTAACGAAAATTTGCATG 1145 >seq3660 Length=14069 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 |||||||| | || || |||||||| || || ||| ||| | |||| ||| Sbjct 2499 ACCAAATGCAATGTCGATTCCTTTTGAATGTTGTAGTCGCCCAATGTTCTGCCATCTTCC 2440 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 |||||||| || ||||| ||||| ||||| || || | || | ||||| || ||| | Sbjct 2439 AATTGTTTGCCAGCAAAAATCAAGCGTTGTTGATCTGGTGGGATTCCTTCCTTCTCTTGA 2380 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 || || ||||| | ||| |||||| | | || || || | || ||||| || Sbjct 2379 ATCTTAGCCTTGACATTTTCAATAGTATCCGAAGCTTCAACTTCCAATGTGATTGTCTTT 2320 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || || |||||||| || || ||||||||| Sbjct 2319 CCAGTCAAAGTCTTGACGAAGATTTGCATG 2290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354428418684036