Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq3660 105 6e-18 seq31860 102 7e-17 seq25532 102 7e-17 seq144 102 7e-17 seq38842 89.7 4e-13 >seq3660 Length=14069 Score = 105 bits (116), Expect = 6e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 |||||||| | ||| ||||| ||||| |||||||| ||||||| ||| | ||||||| Sbjct 2499 ACCAAATGCAATGTCGATTCCTTTTGAATGTTGTAGTCGCCCAATGTTCTGCCATCTTCC 2440 Query 20060 AATTGTTTGCCCGCATAAAT-AAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGC 20118 ||||||||||| ||| |||| |||| | |||||||| || | ||||| || || Sbjct 2439 AATTGTTTGCCAGCAAAAATCAAGCGT-TGTTGATCTGGTGGGATTCCTTCCTTCTCTTG 2381 Query 20119 AATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTT 20178 ||| || || || | ||| || ||| || ||| ||||| || || || || Sbjct 2380 AATCTTAGCCTTGACATTTTCAATAGTATCCGAAGCTTCAACTTCCAATGTGATTGTCTT 2321 Query 20179 GCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || ||||| || ||||| || |||||||| Sbjct 2320 TCCAGTCAAAGTCTTGACGAAGATTTGCAT 2291 >seq31860 Length=14314 Score = 102 bits (112), Expect = 7e-17 Identities = 162/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 19981 TCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCC 20040 ||| || || || || | |||||||| | ||| || |||||||| |||||||| |||| Sbjct 1289 TCCGCCGCGCAATCTTAGGACCAAATGCAATGTGGACTCTTTTTGAATGTTGTAGTCGCT 1230 Query 20041 CATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGG 20100 | ||||| |||||||||||||||||| ||| |||| | || || ||||| || Sbjct 1229 AAGTGTTTTGCCATCTTCCAATTGTTTGCCAGCAAAAATCAATCTTTGCTGATCTGGTGG 1170 Query 20101 CACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATC---GCCAGGTTC 20157 | ||||||||| || ||| || ||| || | ||| |||||| ||| || Sbjct 1169 GATGCCTTCTTTATCCTGAATCTTCAATTTGACATTTTCAATAGAATCTGAGCC---CTC 1113 Query 20158 CGTTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 | ||| | || || ||||| ||||| | ||||| | || |||||||| Sbjct 1112 AGCTTCAAGTGTTATTGTTTTTCCGGTTAGGGTTTTAATGAATATTTGCAT 1062 >seq25532 Length=5913 Score = 102 bits (112), Expect = 7e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 19978 TTTTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATC 20037 || ||| || || || || | ||||| || | |||||| ||||| || || |||||||| Sbjct 914 TTGTCCACCGCGCAATCTGAGAACCAAGTGCAATGTAGACTCTTTCTGGATATTGTAATC 973 Query 20038 GCCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGAC 20097 |||| || ||| ||||||||||||||||| ||| |||| | || |||||||| Sbjct 974 ACCCAATGTCCTAGCGTCTTCCAATTGTTTGCCAGCAAAAATCAATCTTTGTTGATCTGG 1033 Query 20098 GGGCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTC 20157 || | ||||||||| || |||||| || || ||| | ||| | | || Sbjct 1034 TGGGATGCCTTCTTTATCCTGAATTTTACCCTTGACACTTTCAATCGTGTCGGCTGCCTC 1093 Query 20158 CGTTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||| | || || || || || ||||| ||||| || ||||||||||| Sbjct 1094 AACTTCAAGCGTTATTGTCTTTCCTGTCAATGTTTTAACGAAAATTTGCAT 1144 >seq144 Length=14776 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 |||||||| | ||||| ||||| || |||||||| || || ||| ||||||| Sbjct 13522 ACCAAATGCAAAGTAGACTCTTTCTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCC 13463 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 |||||||| || || |||| | | ||| ||||| || | ||||||||||| Sbjct 13462 AATTGTTTTCCAGCGAAAATCAAACGCTGCTGATCTGGAGGAATACCTTCTTTGTCTTGG 13403 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179 || || |||||| | ||| || ||| |||||| ||||| || || ||||| Sbjct 13402 ATCTTAGCTTTCACGTTTTCAATAGTATCCGAAGGTTCGACTTCCAATGTGATCGTTTTT 13343 Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||||| || |||||||| ||||||||||| Sbjct 13342 CCGGTTAAGGTTTTGACGAAAATTTGCAT 13314 >seq38842 Length=12304 Score = 89.7 bits (98), Expect = 4e-13 Identities = 104/134 (78%), Gaps = 6/134 (4%) Strand=Plus/Minus Query 23595 GCGTGTTCTTCCCACGGCTCGTCGGTGCT-TTCCCAGTCTTTGAGGCCGCCGTCGCAA-T 23652 ||||||| |||||| || || || | || |||||||||||| ||||| || | ||| | Sbjct 10945 GCGTGTTGTTCCCATGGGTCATCA-TCCTCTTCCCAGTCTTTTAGGCCTCCTCCACAACT 10887 Query 23653 GAAA-ACATTTGACCCTGTCACCCTTGCCGGTGTAATAAAAACCGGCTTCAGCTAATTGC 23711 ||| ||||| || | ||| ||||| || ||||||||||||||||| ||| ||| | | Sbjct 10886 GAAGCACATT--ACACGGTCGCCCTTTCCCGTGTAATAAAAACCGGCGTCACCTAGATCC 10829 Query 23712 TCTGGCTTTTGTTT 23725 | ||| |||||||| Sbjct 10828 TTTGGTTTTTGTTT 10815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419174231394717