Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq1270 147 2e-30 >seq1270 Length=21014 Score = 147 bits (162), Expect = 2e-30 Identities = 304/444 (68%), Gaps = 14/444 (3%) Strand=Plus/Minus Query 12860 TTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTT 12919 || |||||||||| ||| | ||||| || || || || || ||||||| |||||| | Sbjct 10759 TTCTGATATTCGCCGACTTTCTTTTCGAAGAAATTCGTCTTGCCTTCTAGTGAAATAGAT 10700 Query 12920 TCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACAC-CCTAATTCTAGTAA 12978 ||||| |||| ||| |||||||| | || ||| | || || ||||||| || Sbjct 10699 TCCATGAAATTGAATGGATTTTTAGTGTTGTAA-ATTCGTCCGACTCCCAATTCTATCAA 10641 Query 12979 CAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAA 13038 | |||||||||||| || || || || | | ||| | | || ||||| || | | Sbjct 10640 TAGTCTGTCAGCAACGAATTCAATATATTCTGACATAAGTTTGCAATTCATGCCAAGCAT 10581 Query 13039 TTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTC---GATAAC 13095 | || || | || |||||||| || | | ||| || ||||| ||||| ||||| Sbjct 10580 ATCAACTGGTAAGGCATCTGTTAAGAATTCCTGTTCAATTTCAACAGCTTCACGGATAAT 10521 Query 13096 TATGTCTCTTATTACGTTCTCTAATGGAGGATTT--GA-TAGATGCTTAAACATCATACA 13152 | || | ||| | |||| | || || || || || | ||||| | || Sbjct 10520 T---TCGATGATT-CTTTCTTT--TGTTGGTTTCTGGACTAAGTAACGGAACATAAGGCA 10467 Query 13153 TGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACC 13212 ||||| || ||||| ||||||||||| | | || || |||||||| ||||| ||||| Sbjct 10466 GGCAAAGTCGCAGTGTAATCCTTCATCACGAGAAATGAGTTCGTTTGAGAATGTCAGACC 10407 Query 13213 CGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTAT 13272 |||||||| || ||||| |||| ||| || || | |||||| || || || || Sbjct 10406 AGGCATAAGGCCACGTTTCTTAAGCCAGAAAATGGAAGCAAAACTTCCGCTGAAGAAAAT 10347 Query 13273 TCCTTCAACTGCTGCAAACGCTAT 13296 |||||| || || ||||| ||||| Sbjct 10346 TCCTTCGACGGCAGCAAATGCTAT 10323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430558215943314