Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq144 150 4e-31 seq36344 140 7e-28 seq1270 140 7e-28 seq25532 132 1e-25 seq3660 131 4e-25 seq31860 118 2e-21 seq7849 105 2e-17 seq46230 91.5 3e-13 >seq144 Length=14776 Score = 150 bits (166), Expect = 4e-31 Identities = 151/196 (77%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 104364 TAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAG 104423 || ||||||| ||||| || ||||||||||| || | |||||||| | ||| ||||||| Sbjct 7507 TACATTCTTTTTGAATGTTGTAGTCAGATAGGGTACGTCCGTCTTCCAATTGCTTTCCAG 7566 Query 104424 CAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTA 104483 | ||||| || | |||||||| ||||| |||||||| ||||| |||||||| || || | Sbjct 7567 CGAAAATGAGGCGTTGTTGATCTGGAGGAATTCCTTCCTTATCTTGAATCTTGGCCTTAA 7626 Query 104484 CATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTT 104543 |||| || | || ||| | ||| || |||| || || || ||||| || | ||||| Sbjct 7627 CATTCTCAATGGAATCAGAACCTTCAACTTCTAAGGTTATGGTTTTACCGGTCAATGTTT 7686 Query 104544 TTACAAATATCTGCAT 104559 | ||||| || ||||| Sbjct 7687 TGACAAAGATTTGCAT 7702 Score = 149 bits (164), Expect = 1e-30 Identities = 163/217 (75%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || | ||| |||||||| |||||||||||||| ||||| || | || | |||||| Sbjct 12957 AGAACCAAATGCAATGTAGACTCTTTCTGAATATTGTAGTCGGACAAGGTACGTCCGTCT 12898 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || | || ||||||||||| || | | ||| || || || || || ||||| |||||| Sbjct 12897 TCCAACTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCTGGTGGAATACCTTCCTTATCC 12838 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 || ||||| || ||||| || || | ||||| || || ||||| | || || ||| Sbjct 12837 TGGATCTTAGCCTTTACGTTCTCGATCGTATCAGATGGCTCGACCTCCAAAGTGATGGTC 12778 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCATTTTGT 104564 |||||||| | ||| || || |||||||||||| ||| Sbjct 12777 TTACCAGTCAATGTCTTGACGAATATCTGCATTCTGT 12741 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || | ||| ||||| || ||||||||||| ||||| || || || || | || ||| Sbjct 13185 AGGACCAAATGCAATGTCGACTCTTTCTGAATGTTATAATCTGACAGGGTACGTCCATCT 13126 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || | ||||||||||||||| || | | || ||||| || || || ||||| ||||| Sbjct 13125 TCCAATTGTTTTCCAGCAAAGATCAAACGTTGCTGATCTGGGGGGATACCTTCCTTATCT 13066 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 |||||||| ||||| || ||||| | ||| ||| ||| || ||||| | |||||| ||| Sbjct 13065 TGAATCTTGGCTTTAACGTTTTCAATGGTGTCGGAAGGCTCAACCTCCAATGTAATGGTC 13006 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| | || || || || || ||||| Sbjct 13005 TTTCCAGTCAACGTCTTGACGAAAATTTGCAT 12974 Score = 145 bits (160), Expect = 2e-29 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || | ||| || ||||| ||||||||||| || |||||||| | ||| | || || Sbjct 13526 AAGGACCAAATGCAAAGTAGACTCTTTCTGAATGTTGTAGTCAGACAAAGTACGTCCATC 13467 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| | |||||||||||| ||||| | | ||| ||||| ||||| || |||||||| || Sbjct 13466 TTCCAATTGTTTTCCAGCGAAAATCAAACGCTGCTGATCTGGAGGAATACCTTCTTTGTC 13407 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 || ||||| ||||| || ||||| | ||||| |||||| || || | ||| || || Sbjct 13406 TTGGATCTTAGCTTTCACGTTTTCAATAGTATCCGAAGGTTCGACTTCCAATGTGATCGT 13347 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || | ||||| || || || ||||| Sbjct 13346 TTTTCCGGTTAAGGTTTTGACGAAAATTTGCAT 13314 Score = 140 bits (154), Expect = 7e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 ||||| | ||| ||||| || ||||| || ||||| |||||||| | || | || ||| Sbjct 14209 AGTACCAAATGCAATGTCGACTCTTTTTGGATATTGTAGTCAGACAATGTGCGGCCATCT 14150 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || | ||| |||||||| ||||| | | ||||||||| ||||| || ||||| ||||| Sbjct 14149 TCCAATTGCTTTCCAGCGAAAATCAAACGCTGTTGATCTGGAGGGATGCCTTCCTTATCT 14090 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 ||||| || || ||||||||||| | |||||| || || || || | || || || Sbjct 14089 TGAATTTTAGCCTTTACATTTTCAATGGTATCCGAGGGCTCGACTTCCAAGGTGATGGTT 14030 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| | ||||| || || || ||||| Sbjct 14029 TTGCCAGTTAAGGTTTTCACGAAGATTTGCAT 13998 >seq36344 Length=11671 Score = 140 bits (154), Expect = 7e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || | ||| ||||| ||||| ||||| || || ||||| || | || | |||||| Sbjct 887 AGGACCAAATGCAATGTTGATTCCTTCTGGATGTTGTAGTCGGACAAGGTACGTCCGTCT 828 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || ||||| || ||||||||||| | | ||||| || || || ||||||||||| || Sbjct 827 TCGAGTTGCTTGCCAGCAAAAATCAAACGTTGTTGGTCTGGGGGGATTCCTTCTTTGTCT 768 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 ||||| || ||||||||||| || | || || ||||| || || | ||||||||| Sbjct 767 TGAATTTTAGCTTTTACATTCTCAATTGTGTCTGACGGTTCGACTTCCAATGTAATAGTT 708 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| | || || || ||||| ||||| Sbjct 707 TTTCCAGTCAAAGTCTTGACGAATATTTGCAT 676 Score = 129 bits (142), Expect = 1e-24 Identities = 109/134 (81%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||||||||| |||||||| |||||||| | ||| | || ||||||| ||||||||| Sbjct 644 GTAGATTCTTTTTGAATATTGTAGTCAGACAAAGTACGGCCATCTTCTAATTGTTTTCCG 585 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || ||||| | | ||||||||| || || || ||||| |||||||| ||||| || ||| Sbjct 584 GCGAAAATCAAACGCTGTTGATCTGGTGGAATACCTTCCTTATCCTGGATCTTGGCCTTT 525 Query 104483 ACATTTTCTACGGT 104496 |||||||| | ||| Sbjct 524 ACATTTTCAATGGT 511 >seq1270 Length=21014 Score = 140 bits (154), Expect = 7e-28 Identities = 330/493 (67%), Gaps = 8/493 (2%) Strand=Plus/Plus Query 269069 TGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAACGAT-AGCGCGCC--TTAC 269125 ||||| | ||| || | || |||||| | |||||||| | | || |||| |||| Sbjct 10251 TGTGTCAAAAAGAAGGCCGATTGGGCTATTCAATGGATATGCAGTCAGAACGCCAATTAC 10310 Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 |||||| | | | || ||||| || || ||||| || ||||| || |||||| Sbjct 10311 GGAGAACGCATTATAGCATTTGCTGCCGTCGAAGGAATTTTCTTCAGCGGAAGTTTTGCT 10370 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 | || || ||| | |||||| | ||||||||||| || | || ||||| |||||| | Sbjct 10371 TCCATTTTCTGGCTTAAGAAACGTGGCCTTATGCCTGGTCTGACATTCTCAAACGAACTC 10430 Query 269246 ATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTG-TTTATTATTTACTAATTATCT 269304 || | || ||||| |||||||||||||| || || |||| | || ||| Sbjct 10431 ATTTCTCGTGATGAAGGATTACACTGCGACTTTGCCTGCCTTATGTTCCGTTACTTA--- 10487 Query 269305 TTCACACAAACCTTCTCAAGATAGAGTATACGAAATTATAGATTCAGCTGTTTCTGTAGA 269364 || || ||||| | |||| ||| | ||||||||| | ||||||| | || Sbjct 10488 GTC-CAGAAACCAACAAAAGAAAGAATCATCGAAATTATCCGTGAAGCTGTTGAAATTGA 10546 Query 269365 AACAGAATTTCTAACGGAAGCTCTATCTATCGATCTTATCGGTATGAATAGCAAATCGAT 269424 | ||||| |||| || || || | | ||| | | || |||||| ||||| || Sbjct 10547 ACAGGAATTCTTAACAGATGCCTTACCAGTTGATATGCTTGGCATGAATTGCAAACTTAT 10606 Query 269425 GATAGAATATATTAAGTTCGTATCTGATAGATTGCTGGTGTCTTTAGGGTTTAGTAAAAA 269484 | |||||||||| | ||||| |||| ||| | || | || || | | || Sbjct 10607 GTCAGAATATATTGAATTCGTTGCTGACAGACTATTGATAGAATTGGGAGTCGGACGAAT 10666 Query 269485 ATATAACGTTGAAAATCCGTTTAGTTTTATGGAGAATATATCATTAGAAGGTAAGGCTAA 269544 || ||| | ||||||| || | ||| ||||| ||| ||| ||||||| ||| | || Sbjct 10667 TTACAACACTAAAAATCCATTCAATTTCATGGAATCTATTTCACTAGAAGGCAAGACGAA 10726 Query 269545 TTTCTTCGAGAAG 269557 ||||||||| ||| Sbjct 10727 TTTCTTCGAAAAG 10739 >seq25532 Length=5913 Score = 132 bits (146), Expect = 1e-25 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 || |||||||| |||||||| ||||| || ||| | || ||| ||||||| | |||| Sbjct 942 TGCAATGTAGACTCTTTCTGGATATTGTAATCACCCAATGTCCTAGCGTCTTCCAATTGT 1001 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || ||||||||||| | || |||||||| || || || ||||||||||||||||| || Sbjct 1002 TTGCCAGCAAAAATCAATCTTTGTTGATCTGGTGGGATGCCTTCTTTATCCTGAATTTTA 1061 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 | || ||| |||| | || ||| | || || || || || || ||||| || || Sbjct 1062 CCCTTGACACTTTCAATCGTGTCGGCTGCCTCAACTTCAAGCGTTATTGTCTTTCCTGTC 1121 Query 104537 AGTGTTTTTACAAATATCTGCAT 104559 | |||||| || || || ||||| Sbjct 1122 AATGTTTTAACGAAAATTTGCAT 1144 >seq3660 Length=14069 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || | ||| ||||| ||||| || ||||| || ||||| | ||||| || ||| Sbjct 2502 AGGACCAAATGCAATGTCGATTCCTTTTGAATGTTGTAGTCGCCCAATGTTCTGCCATCT 2443 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || | |||||| ||||||||||| | | |||||||| || || |||||||| || || Sbjct 2442 TCCAATTGTTTGCCAGCAAAAATCAAGCGTTGTTGATCTGGTGGGATTCCTTCCTTCTCT 2383 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 |||||||| || || |||||||| | ||||| || ||| || || | ||| || ||| Sbjct 2382 TGAATCTTAGCCTTGACATTTTCAATAGTATCCGAAGCTTCAACTTCCAATGTGATTGTC 2323 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| | || || || || || ||||| Sbjct 2322 TTTCCAGTCAAAGTCTTGACGAAGATTTGCAT 2291 >seq31860 Length=14314 Score = 118 bits (130), Expect = 2e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 104345 CTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCG 104404 || || || | ||| ||||| || ||||| ||||| || ||||| || ||| | || Sbjct 1276 CTTAGGACCAAATGCAATGTGGACTCTTTTTGAATGTTGTAGTCGCTAAGTGTTTTGCCA 1217 Query 104405 TCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTA 104464 ||||| | |||||| ||||||||||| | || || ||||| || || || ||||||||| Sbjct 1216 TCTTCCAATTGTTTGCCAGCAAAAATCAATCTTTGCTGATCTGGTGGGATGCCTTCTTTA 1157 Query 104465 TCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATA 104524 ||||||||||| ||| |||||||| | | ||| || | || ||||| || Sbjct 1156 TCCTGAATCTTCAATTTGACATTTTCAATAGAATCTGAGCCCTCAGCTTCAAGTGTTATT 1097 Query 104525 GTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || ||||| | ||||| ||||| Sbjct 1096 GTTTTTCCGGTTAGGGTTTTAATGAATATTTGCAT 1062 >seq7849 Length=1912 Score = 105 bits (116), Expect = 2e-17 Identities = 240/356 (67%), Gaps = 4/356 (1%) Strand=Plus/Plus Query 238431 CGTGAACTAGCTGATAATTTTTGCTATTATAATAAAAGATATGATTCTATAGAATCCACA 238490 || ||| || ||||||||||||||||||| ||||| | |||||||| | || | Sbjct 1451 CGCGAATTATCTGATAATTTTTGCTATTACAATAAGAATTATGATTCCTTGAAAGGTGCG 1510 Query 238491 CATTCATGGGCACGAGAAACATTAGAAGCACACGTAAATGATAGAAGAAAATATATTTAC 238550 | ||||| | |||||||| | ||| ||| |||| ||| | | || | || Sbjct 1511 TCTGATTGGGCTCAGAAAACATTAAGCGAACATCGAAAGGATAAAAGGACAAATTTGTAT 1570 Query 238551 TCTTTAAAACAGCTCGAGAGAGCCGAA-ACTCACGATCCCCTATGGAATTCCGCCCAGAT 238609 | | || |||| | ||| | || || || || |||||||||| || ||||| Sbjct 1571 ACAAGAGAAGAGCTACA-AGATTCAAAGACCCATGACGATTTATGGAATTCAGCACAGAT 1629 Query 238610 ACAAATGGTAAGACTAGGCAAAATGCATAGTTTCTTACGAATGTATTGGGCTAAAAAGAT 238669 ||| | || || ||| |||||||| | || ||||| ||||| ||||| || ||||| Sbjct 1630 ACAGCTAGTTCGAGAAGGAAAAATGCACGGCTTTTTACGTATGTACTGGGCCAAGAAGAT 1689 Query 238670 ACTTGAATGGACTAGATCTCCAAAGGAAGCTCTTAGA-TATAGTATTTATCTGAACGATA 238728 | | || ||||| | | ||| | |||| || ||| || || ||| | || ||| Sbjct 1690 ATTAGAGTGGACAGAAACACCAGAACAAGCACT-AGAGTACGCAATATATATAAATGATC 1748 Query 238729 AATACGAACTCGACGGTACGGATCCTAACGGATACGTAGGTTGTATGTGGTCAATA 238784 ||| || || || | || ||||||||||| || ||||| |||||||| ||| Sbjct 1749 GTTACAGTCTTGATGGAAGAGACCCTAACGGATATGTCGGTTGCATGTGGTCTATA 1804 >seq46230 Length=8760 Score = 91.5 bits (100), Expect = 3e-13 Identities = 160/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 165098 GATAAGGATGAATGGAATACTTGGAATAAAATACACGATCCTGTTTTACATATAGAGCTA 165157 |||| ||||||||| |||||||||| | ||||| ||| | ||||| || | Sbjct 541 GATACAGATGAATGGGCATTGTGGAATAAAAGAGGAGATCCAGTTCTTCATATTGAATTG 600 Query 165158 AGAAGATGGGCAGATATGATGTTGATAGCACCCTTAACAGCAAACAGTTTAGCGAAGATA 165217 ||| |||||| ||| | ||| | || ||||| || ||||| | || | || || Sbjct 601 GGAAAATGGGCTGATTTAATGGTTATTGCACCATTGGATGCAAATACGTTGTCAAAAATG 660 Query 165218 GCTAACGGTATCTGTAATAACTTGTTAACGTGTATAGTTAGAGCGTGGAATATTAATAAA 165277 || || || |||| |||| || | || || | |||| ||| || | || ||| Sbjct 661 GCCAATGGGCTCTGCGATAATTTACTTTTGTCTACAACGCGAGCTTGGGATTTGAAGAAA 720 Query 165278 CCTTTACTTTTCTGTCCAGCTATGAATACACTTATGTGGGAACATCCTATTAC 165330 || ||||| || || ||||| ||||||||| |||||||||||||| || || Sbjct 721 CCATTACTATTTTGCCCAGCAATGAATACAAGAATGTGGGAACATCCCATAAC 773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150207049154956