Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= NC_005905.1 Length=86462 Score E Sequences producing significant alignments: (Bits) Value seq1210 181 6e-41 >seq1210 Length=6617 Score = 181 bits (200), Expect = 6e-41 Identities = 362/526 (69%), Gaps = 19/526 (4%) Strand=Plus/Plus Query 3627 TATATTTTGCTGACGTATGCGCTGGTCCAGGTGGTTTCAGTGAATATATGTTATGGAGAA 3686 ||||||||||||| || || || || ||||| || |||| ||||||||| |||||||||| Sbjct 4643 TATATTTTGCTGATGTGTGTGCAGGACCAGGAGGCTTCACTGAATATATATTATGGAGAA 4702 Query 3687 AGAAATGGAATATCAAA-GGTTATGGTATGACGTTACGCGaaaaaaaTGATTTTCAACTG 3745 | ||||||| || |||| || | |||| | || || | | |||||||| | || Sbjct 4703 AAAAATGGA-TAGCAAAAGGATTTGGTTTTACACTAAAAGGTGACAATGATTTCAAGTTG 4761 Query 3746 AACAGATTTTACGATAACTTTTCGGAAACTTTACACCCGTATTATGGTCCGCTTAA--CG 3803 | || | | | | | ||||| || |||| |||||||| | | || || Sbjct 4762 CATGACTTCTTTTCTGGATGTCCCGAAACATTTGACCCATATTATGG--CATTAAAGACG 4819 Query 3804 ATGGTAATATCTACAATTCA--CAAAATCAGAAAGGTTTTTGTGAAATGATTATGAAAGA 3861 |||||||| | | || || ||| || ||| | ||| || |||||| || | Sbjct 4820 ATGGTAATGTTTTTGATCCAGCCAATATT-GAA---TCTTT---AACAGATTATATAA-A 4871 Query 3862 TACCGAAGGAA---AAGGTGTACATTTTATGATGGCTGACGGTGGGTTCTCGGTTGAGGG 3918 || || || | || || |||||||||||||| |||||||| || || || || || Sbjct 4872 TAAGCAAACAATTTATGGGGTCCATTTTATGATGGCCGACGGTGGCTTTTCTGTAGAAGG 4931 Query 3919 TCAAGAAAATATGCAAGAAATGTTATCGAAAAAGATGTATTTGTGTCAATGTTTAATTGC 3978 || |||||| | |||||||| ||||| ||| | ||||||| |||||| || | || Sbjct 4932 ACAGGAAAATGTTCAAGAAATCTTATCTAAACAACTGTATTTATGTCAAATATTGGTGGC 4991 Query 3979 ATTGATGATCATACGAATTGGTGGTCATTGTGTTATCAAATTTTTCGATATATTTACACC 4038 |||| | | | ||| ||| |||| |||| ||||||| || || | |||||||| Sbjct 4992 ATTGTCGGTAGTTAGAACAAATGGACATTTTGTTGTCAAATTATTTGACCTGTTTACACC 5051 Query 4039 TTTTAGTGCTGGTTTAGTGTATTTGATGTATAGATCTTTTAATCGTATTTGTATTTTCAA 4098 ||||| | ||| || | | ||| ||||||| || ||| || |||||||||| || Sbjct 5052 ATTTAGCGTTGGATTGATTTTTTTAATGTATAAATGTTTCAAAAAAATTTGTATTTGTAA 5111 Query 4099 ACCACATTCATCGCGACCGGCCAATTCTGAAAGATATTTGGTGTGT 4144 ||| || || |||| || |||||||| | ||||| || ||| Sbjct 5112 GCCAAATACAAGCAGACCTGCAAATTCTGAGCGCTATTTAGTTTGT 5157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 276281408773771