Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq34605 95.1 6e-15 seq17289 95.1 6e-15 seq1214 95.1 6e-15 seq80099 91.5 8e-14 seq64268 91.5 8e-14 seq45511 89.7 3e-13 seq638 86.0 3e-12 >seq34605 Length=1566 Score = 95.1 bits (104), Expect = 6e-15 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||| | || |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 154 TGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 95 Query 11516 TGAGCTAATGGGCCGT 11531 ||||||| ||||||| Sbjct 94 TGAGCTATGGGGCCGT 79 Score = 95.1 bits (104), Expect = 6e-15 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||| | || |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 1385 TGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 1444 Query 11516 TGAGCTAATGGGCCGT 11531 ||||||| ||||||| Sbjct 1445 TGAGCTATGGGGCCGT 1460 >seq17289 Length=2242 Score = 95.1 bits (104), Expect = 6e-15 Identities = 74/88 (84%), Gaps = 2/88 (2%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||||| || ||||| || |||||||||| ||||||||||||||||||||||||| Sbjct 124 AAAAATAAA--TGGCCACAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACG 181 Query 11505 CTCTRACCAACTGAGCTAATGGGCCGTC 11532 |||| ||||||||||||| ||||||| Sbjct 182 CTCTAACCAACTGAGCTATGCGGCCGTC 209 Score = 91.5 bits (100), Expect = 8e-14 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 11462 ATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCT 11521 || | |||||||||| ||||||||||||||||||||||||||||| |||||||||||| Sbjct 214 ATNAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCT 273 Query 11522 AATGGGCCGTC 11532 | ||||||| Sbjct 274 ATGCGGCCGTC 284 >seq1214 Length=5418 Score = 95.1 bits (104), Expect = 6e-15 Identities = 74/88 (84%), Gaps = 2/88 (2%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| | |||| | || |||||||||| |||||||||||||||||||||||| Sbjct 4031 AAAAAATTAC--TGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGAC 4088 Query 11504 GCTCTRACCAACTGAGCTAATGGGCCGT 11531 ||||| ||||||||||||| ||||||| Sbjct 4089 GCTCTAACCAACTGAGCTATGGGGCCGT 4116 Score = 89.7 bits (98), Expect = 3e-13 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 11464 GAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAA 11523 || |||||||||| ||||||||||||||||||||||||||||| ||||||||||||| Sbjct 5207 GAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAT 5266 Query 11524 TGGGCC 11529 ||||| Sbjct 5267 GGGGCC 5272 >seq80099 Length=4972 Score = 91.5 bits (100), Expect = 8e-14 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||| || |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 389 TGGCCACAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 330 Query 11516 TGAGCTAATGGGCCGTC 11532 ||||||| ||||||| Sbjct 329 TGAGCTATGCGGCCGTC 313 >seq64268 Length=1328 Score = 91.5 bits (100), Expect = 8e-14 Identities = 61/69 (88%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 11464 GAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAA 11523 || |||||||||| ||||||||||||||||||||||||||||| ||||||||||||| Sbjct 617 GAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAT 676 Query 11524 TGGGCCGTC 11532 ||||||| Sbjct 677 GCGGCCGTC 685 >seq45511 Length=1909 Score = 89.7 bits (98), Expect = 3e-13 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||| || |||||||||| ||||||||||||||||||||||||||||| || Sbjct 732 AAACTGGCCACAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAAC 673 Query 11512 CAACTGAGCTA 11522 ||||||||||| Sbjct 672 CAACTGAGCTA 662 >seq638 Length=4186 Score = 86.0 bits (94), Expect = 3e-12 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||| || ||||||||| ||||||||||||||||||||||||||||| || Sbjct 4089 AAAGTGGCCACAGAGTGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAAC 4030 Query 11512 CAACTGAGCTAATGGGCCGTC 11532 |||| |||||| ||||||| Sbjct 4029 CAACCGAGCTATGCGGCCGTC 4009 Lambda K H 0.639 0.410 0.921 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261233833578532