Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq144 123 2e-23 seq25532 109 5e-19 seq3660 105 6e-18 seq31860 98.7 9e-16 seq36344 82.4 7e-11 >seq144 Length=14776 Score = 123 bits (136), Expect = 2e-23 Identities = 154/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 ||||| ||||| || || |||||||| | || || ||| || |||| | ||| ||| Sbjct 14662 ACCAAATGCAATGTCGACTCCTTTTGAATATTGTAGTCGGACAAAGTGCGGCCATCTTCC 14603 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 | ||||| ||| | || || || | ||||||||||||||||||||||||||||| | Sbjct 14602 AATTGTTTACCGGCGAAAATCAAACGCTGCTGATCTGGAGGAATACCTTCTTTGTCCTGG 14543 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || ||||| ||| | | || || | | | || || || | ||||| ||||| Sbjct 14542 ATCTTGGCCTTAACGTTTTCAATGGTATCTGAGGGCTCAACTTCCAAGGTGATAGTTTTG 14483 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 ||||| | |||||| || || |||||||||| Sbjct 14482 CCAGTCAAAGTTTTAACGAAAATCTGCATGC 14452 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 ||||| ||||| || || |||||||| | ||| || || || || ||| ||| Sbjct 13750 ACCAAATGCAATGTCGACTCCTTTTGAATGTTGTAGTCTGACAAGGTACGTCCATCTTCC 13691 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 | || ||||| | || || | | ||| |||||||||||||||||||||||||| | Sbjct 13690 AATTGCTTTCCAGCGAAAATGAGACGTTGTTGATCTGGAGGAATACCTTCTTTGTCTTGG 13631 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || ||||| ||| | | ||| || | | | ||||| || | |||||||||||| Sbjct 13630 ATCTTGGCCTTAACGTTTTCAATAGTATCCGAGGGCTCGACTTCCAAAGTGATGGTTTTT 13571 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || | ||||| ||||| |||||||| Sbjct 13570 CCTGTCAATGTTTTAACAAAAATCTGCAT 13542 Score = 111 bits (122), Expect = 1e-19 Identities = 151/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 ||||| ||||| || || |||||||| | || || || || || | ||| || Sbjct 14434 ACCAAATGCAATGTCGACTCCTTTTGGATATTGTAGTCTGACAATGTACGGCCATCTTCT 14375 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 | ||||| ||| |||| || || | || ||||||||||| |||||||| || || | | Sbjct 14374 AATTGTTTGCCGGCAAAAATCAAACGCTGTTGATCTGGAGGGATACCTTCCTTATCTTGA 14315 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 ||||| || || || ||| ||||| | | | ||||| || | ||||||||||| Sbjct 14314 ATTTTAGCTTTAACATTTTCGATTGTGTCCGAGGGCTCGACTTCCAAGGTGATGGTTTTG 14255 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 ||||| | |||||||| ||||| ||||||| Sbjct 14254 CCAGTTAAGGTTTTCACGAAGATTTGCATGC 14224 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 ||||| ||||||||||| || || || | ||| || || || ||| ||| ||| Sbjct 13522 ACCAAATGCAAAGTAGACTCTTTCTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCC 13463 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 | |||||||| | || || || | ||||||||||||||||||||||||||||| | Sbjct 13462 AATTGTTTTCCAGCGAAAATCAAACGCTGCTGATCTGGAGGAATACCTTCTTTGTCTTGG 13403 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || || || ||| | | ||| || | | ||||| || | ||||| |||||| Sbjct 13402 ATCTTAGCTTTCACGTTTTCAATAGTATCCGAAGGTTCGACTTCCAATGTGATCGTTTTT 13343 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || | ||||| || || || ||||| Sbjct 13342 CCGGTTAAGGTTTTGACGAAAATTTGCAT 13314 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 ||||| ||||| || || || ||||| | || || || || ||| | ||| ||| Sbjct 14206 ACCAAATGCAATGTCGACTCTTTTTGGATATTGTAGTCAGACAATGTGCGGCCATCTTCC 14147 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 | || ||||| | || || || | || ||||||||||| || ||||| || || | | Sbjct 14146 AATTGCTTTCCAGCGAAAATCAAACGCTGTTGATCTGGAGGGATGCCTTCCTTATCTTGA 14087 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 ||||| ||||| || | | || || | | | ||||| || | ||||||||||| Sbjct 14086 ATTTTAGCCTTTACATTTTCAATGGTATCCGAGGGCTCGACTTCCAAGGTGATGGTTTTG 14027 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 ||||| | |||||||| ||||| ||||||| Sbjct 14026 CCAGTTAAGGTTTTCACGAAGATTTGCATGC 13996 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/213 (70%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCT 94856 ||||| ||||| || || || || || | ||||||||| | | || || | ||| | Sbjct 13182 ACCAAATGCAATGTCGACTCTTTCTGAATGTTATAATC--TGACAGGGTACGTCCATCTT 13125 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 ||| |||||||| ||||||| || | |||||||||||| || |||||||| || || | Sbjct 13124 CCAATTGTTTTCCAGCAAAGATCAAACGTTGCTGATCTGGGGGGATACCTTCCTTATCTT 13065 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976 ||| || || || ||| | | ||||| | | || || || | || ||||| | Sbjct 13064 GAATCTTGGCTTTAACGTTTTCAATGGTGTCGGAAGGCTCAACCTCCAATGTAATGGTCT 13005 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 ||||||| | || || || || || ||||||| Sbjct 13004 TTCCAGTCAACGTCTTGACGAAAATTTGCATGC 12972 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGT--GTTGGAATCCT 94856 ||||| ||||| ||||| || || || | || || ||| || || || | || | Sbjct 12954 ACCAAATGCAATGTAGACTCTTTCTGAATATTGTAGTCGGACAAGGTACGTCCG--TCTT 12897 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 ||| ||| ||||| ||||||| || | ||||| ||||| ||||||||||| || || | Sbjct 12896 CCAACTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCTGGTGGAATACCTTCCTTATCCT 12837 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976 || || ||||| ||| ||| || |||| | ||||| || | |||||||| | Sbjct 12836 GGATCTTAGCCTTTACGTTCTCGATCGTATCAGATGGCTCGACCTCCAAAGTGATGGTCT 12777 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCATGCT 95010 | ||||| | || || || || |||||||| || Sbjct 12776 TACCAGTCAATGTCTTGACGAATATCTGCATTCT 12743 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 ||||| ||||| || || |||||||| | || || || || ||| | ||| || Sbjct 13978 ACCAAATGCAATGTCGACTCCTTTTGGATATTGTAGTCAGACAAAGTACGGCCATCTTCT 13919 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 | |||||||| | || || || | || |||||||| || |||||||| || || | Sbjct 13918 AATTGTTTTCCTGCGAAAATCAAACGCTGTTGATCTGGTGGGATACCTTCCTTATCCTGG 13859 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || ||||| ||| ||| || || | | | ||||| || | ||||||||||| Sbjct 13858 ATCTTGGCCTTAACGTTCTCGATGGTATCCGAGGGCTCGACTTCCAAGGTGATGGTTTTG 13799 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| | || || || ||||| ||||| Sbjct 13798 CCAGTCAATGTCTTGACGAAGATTTGCAT 13770 >seq25532 Length=5913 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 94780 TCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCT 94839 ||| || | ||||| | ||||||||||| ||||| || || || | || ||||| | Sbjct 917 TCCACCGCGCAATCTGAGAACCAAGTGCAATGTAGACTCTTTCTGGATATTGTAATCACC 976 Query 94840 CATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGG 94899 || || | | || |||| ||||| || |||| || |||||||| |||||||| || Sbjct 977 CAATGTCCTAGCGTCTTCCAATTGTTTGCCAGCAAAAATCAATCTTTGTTGATCTGGTGG 1036 Query 94900 AATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGAC 94959 || |||||||| || | |||||| ||||||| | | ||||| || || || Sbjct 1037 GATGCCTTCTTTATCCTGAATTTTACCCTTGACACTTTCAATCGTGTCGGCTGCCTCAAC 1096 Query 94960 GTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 |||| ||| || || ||||| || | ||||| || || || ||||||| Sbjct 1097 TTCAAGCGTTATTGTCTTTCCTGTCAATGTTTTAACGAAAATTTGCATGC 1146 >seq3660 Length=14069 Score = 105 bits (116), Expect = 6e-18 Identities = 150/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 ||||| ||||| || ||||||||||| | ||| || |||| || || || ||| ||| Sbjct 2499 ACCAAATGCAATGTCGATTCCTTTTGAATGTTGTAGTCGCCCAATGTTCTGCCATCTTCC 2440 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 | ||||| || |||| || || | ||| |||||||| || || ||||| || || | | Sbjct 2439 AATTGTTTGCCAGCAAAAATCAAGCGTTGTTGATCTGGTGGGATTCCTTCCTTCTCTTGA 2380 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || |||||||| | | ||| || | || || || | ||||| || ||| Sbjct 2379 ATCTTAGCCTTGACATTTTCAATAGTATCCGAAGCTTCAACTTCCAATGTGATTGTCTTT 2320 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 ||||| | ||| || || ||||| ||||||| Sbjct 2319 CCAGTCAAAGTCTTGACGAAGATTTGCATGC 2289 >seq31860 Length=14314 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 94779 CTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGC 94838 |||| || | ||||| | ||||| ||||| || || || ||||| | ||| || |||| Sbjct 1290 CTCCGCCGCGCAATCTTAGGACCAAATGCAATGTGGACTCTTTTTGAATGTTGTAGTCGC 1231 Query 94839 TCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 | | || ||| ||| |||| ||||| || |||| || ||||||||||||||||| | Sbjct 1230 TAAGTGTTTTGCCATCTTCCAATTGTTTGCCAGCAAAAATCAATCTTTGCTGATCTGGTG 1171 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 | || |||||||| || | ||| || ||||| | | || || | | || Sbjct 1170 GGATGCCTTCTTTATCCTGAATCTTCAATTTGACATTTTCAATAGAATCTGAGCCCTCAG 1111 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | |||| || || |||||||| || || ||||| | || || ||||| Sbjct 1110 CTTCAAGTGTTATTGTTTTTCCGGTTAGGGTTTTAATGAATATTTGCAT 1062 >seq36344 Length=11671 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/211 (69%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGT--GTTGGAATCCT 94856 ||||| ||||| || |||||||| || | ||| || ||| || || || | || | Sbjct 884 ACCAAATGCAATGTTGATTCCTTCTGGATGTTGTAGTCGGACAAGGTACGTCCG--TCTT 827 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 | || || || || |||| || || | ||| || ||||| || || ||||||||||| | Sbjct 826 CGAGTTGCTTGCCAGCAAAAATCAAACGTTGTTGGTCTGGGGGGATTCCTTCTTTGTCTT 767 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976 |||||| || || || | | ||||| | | ||||| || | || || |||| Sbjct 766 GAATTTTAGCTTTTACATTCTCAATTGTGTCTGACGGTTCGACTTCCAATGTAATAGTTT 707 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||||| | ||| || || || || ||||| Sbjct 706 TTCCAGTCAAAGTCTTGACGAATATTTGCAT 676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447838666844520