Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq73783 183 5e-42 seq7414 167 4e-37 >seq73783 Length=1569 Score = 183 bits (202), Expect = 5e-42 Identities = 203/268 (76%), Gaps = 2/268 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||| | | | || |||||||||||||| || || || ||||| || Sbjct 239 GCCAAGCGTCATCGTAAAGTATTACGTGATAACATCCAAGGTATTACAAAACCAGCCATT 298 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| || ||||||||||| || || ||| | ||||||||| |||| ||||| | | Sbjct 299 CGTCGTCTAGCACGTCGTGGTGGTGTAAAACGTATTTCTGGATTGATCTACGAAGAAACT 358 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG-CTTTCCACTATACCGA 16611 |||| ||| ||||| | ||| | | | || |||| ||||| | || || || || || Sbjct 359 CGTGGTGTCTTGAAAGTATTCTTGGAAAATGTAATCCGTGATGCCGTTACA-TACACAGA 417 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || | ||||| ||||| | |||||| | |||||||| |||||||||||||| Sbjct 418 ACACGCAAAGAGGAAGACAGTCACAGCTATGGATGTTGTCTATGCTTTGAAACGTCAAGG 477 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | || ||||| ||| ||||| Sbjct 478 ACGTACTTTGTACGGTTTCGGAGGTTAA 505 >seq7414 Length=4200 Score = 167 bits (184), Expect = 4e-37 Identities = 197/267 (74%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || |||||||| | | | || |||||||||||||| ||||| || |||||||| Sbjct 2607 GCAAAACGTCATCGAAAAGTATTGCGTGATAACATCCAAGGTATCACTAAACCAGCTATT 2666 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||| |||| ||| | ||||| || |||||| | || || | |||||||||||| Sbjct 2667 CGTCGTTTGGCCCGTAGAGGTGGTGTGAAGCGTATTTCCGGTCTCATCTATGAAGAGACG 2726 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||||| || ||||| | | | ||| |||| ||||| || ||| || || Sbjct 2727 CGTGGCGTTTTAAAAGTCTTCTTGGAAAACGTCATCCGAGATGCCGTCACCTACACTGAA 2786 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| ||| | ||||| || || | ||||| |||| ||||| | |||||||||||| Sbjct 2787 CACGCCAAAAGAAAGACAGTTACAGCTATGGACGTCGTATATGCCCTAAAACGTCAAGGC 2846 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | |||||||||| || ||||| Sbjct 2847 CGCACACTTTATGGTTTCGGTGGTTAA 2873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79001363309601