Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq1270 145 8e-30 >seq1270 Length=21014 Score = 145 bits (160), Expect = 8e-30 Identities = 397/600 (66%), Gaps = 6/600 (1%) Strand=Plus/Minus Query 21127 TTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTTT 21186 |||||||||||| || || | ||||||||| || ||| | | | | || | || Sbjct 10817 TTAAAAATCAGCGTCCAAAGTGAAAACATTGTCCAAACGTTTGGCCGTCACGCCAAACTT 10758 Query 21187 TTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTC 21246 ||||| || | ||| | |||||||| ||||| ||||| ||||| | ||| |||||||| Sbjct 10757 CTGATATTCGCCGACTTTCTTTTCGAAGAAATTCGTCTTGCCTTCTAGTGAAATAGATTC 10698 Query 21247 CATAAAATCAAATGGATTTTCAGATTTAAATATT-TTATTACAACCCAGTTCTGATAATA 21305 ||| |||| |||||||||| || || | ||| | || |||| |||| |||| Sbjct 10697 CATGAAATTGAATGGATTTTTAGTGTTGTAAATTCGTCCGAC-TCCCAATTCTATCAATA 10639 Query 21306 ATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAATT 21365 ||| || || || ||||| ||||||| |||| | || |||||||| || | || | Sbjct 10638 GTCTGTCAGCAACGAATTCAATATATTCTGACATAAGTTTGCAATTCATGCCAAGCATAT 10579 Query 21366 TTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTATAT 21425 || || | || | ||| || || | ||| || || |||||| || || | Sbjct 10578 CAACTGGTAAGGCATCTGTTAAGAATTCCTGTTCAATTTCAACAGCTTCACGGATAATTT 10519 Query 21426 TTATTATCCTAGATGTACTAGGGGGATACAATAATTGTTTAAACATCAAACATGCAAAAT 21485 || || || | | | || | | ||| | ||||| | || ||||| | Sbjct 10518 CGATGATTCTTTCTTTTGTTGGTTTCTGGACTAAGTAACGGAACATAAGGCAGGCAAAGT 10459 Query 21486 CACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTA 21545 | || || || |||||||| | | || | ||| || || ||||| | ||| ||||| | Sbjct 10458 CGCAGTGTAATCCTTCATCACGAGAAATGAGTTCGTTTGAGAATGTCAGACCAGGCATAA 10399 Query 21546 ATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCAA 21605 || | || || | ||| || || || ||||| ||| |||||||| || || | Sbjct 10398 GGCCACGTTTCTTAAGCCAGAAAATGGAAGCAAAACTTCCGCTGAAGAAAATTCCTTCGA 10339 Query 21606 CGGCAGCAAATGCAACTAAT-CGTTCACCGTATGTAG-ATTCTTTATCCAATATCCATTT 21663 ||||||||||||| | |||| ||||| ||||| | | |||| | | ||||||||| Sbjct 10338 CGGCAGCAAATGCTA-TAATGCGTTCTCCGTAATTGGCGTTCTGACTGC-ATATCCATTG 10281 Query 21664 TTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTTAAAAGATG 21723 ||||| | ||||| | ||| | ||| || || |||| || || || ||||| Sbjct 10280 AATAGCCCAATCGGCCTTCTTTTTGACACATGGAAGGGTCTCAACTGCATTGAATAGATG 10221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531363866088680