Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq71022 551 7e-152 seq1270 197 2e-45 >seq71022 Length=3779 Score = 551 bits (610), Expect = 7e-152 Identities = 1263/1888 (67%), Gaps = 29/1888 (2%) Strand=Plus/Plus Query 61977 ATTTTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAG 62036 ||||| || || || | || |||||||||| | || ||||| || || | ||| Sbjct 763 ATTTTGTC-TTATCGACGGTAAATTGAATGGCATTAACGGCTGGTTTTGTTCGCAAATAA 821 Query 62037 TACATTCCCGTTTTTAGACCGAGACT-CCATCCGTAAAAATGCATACTCGTTAGTTTGGA 62095 |||||||| ||||||| ||| ||| | ||| ||| |||| || || |||||||| Sbjct 822 TACATTCCAGTTTTTAAACC-AGATTTCCAGCCGAAAAAGTGAATTGAGGTTAGTTTTCC 880 Query 62096 ATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCT 62155 |||| | || || || | ||| || || | || || ||||||||||| ||||| | Sbjct 881 ATAATTGGGCTCGGCGACATGAATGTTGAATGACTGGGACTGATCGATGAATGCTCCTCG 940 Query 62156 GTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTC 62214 |||||||||||||||||| | || | || |||||||| ||||| || || || Sbjct 941 ATCTGCAGCCATTTTTATGGCCACTTTGACCGAAACTTCCCAAACGGTTTTGTACAATTC 1000 Query 62215 GCTTAATATCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCCATAATCC 62271 | ||| || ||||| | | |||| |||||||| || || |||| ||| Sbjct 1001 ACG-AATGTCAAATGGAATTTCTTCAATATTTTGAATGGAACCGTTATTGGCCAAAATTT 1059 Query 62272 TATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGAT 62331 |||| || || ||||| | |||||| | | || |||||| || |||| | ||| ||| Sbjct 1060 TATTTTTCATATCATCGTCCCATAAATCGCGTTCAGTTAAATCTTTAAGCAAATGATGAT 1119 Query 62332 TAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTT 62391 | || || || ||||| || || | || | ||| |||| | || || || |||| Sbjct 1120 TGACAACCTGGAATTCACCCGATAGGACACGTCGATTGTAGACGTTTGATGTGTAAGGTT 1179 Query 62392 CCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCA 62451 | | || ||||| ||||| | |||||| ||||| || || || ||||| ||||||| | Sbjct 1180 CAAATGATTCATTGTTTCCGAGAATTTGTGCAGTCGAAGCGGTTGGCATTGGTGCCAAAA 1239 Query 62452 ATAAACTATTTCTAAGACCGTATGTTCTG---ATTTTATCTTTTAGAGGTTCCCAATTCC 62508 || |||||| | ||| |||| || ||||| | || | |||||||||| Sbjct 1240 GTAGGGAATTTCTGATACC---TGTTTTGGCAATTTTCTGCTTCAATTCATCCCAATTCC 1296 Query 62509 AAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACG 62568 | | ||| | ||| || | ||| || ||||| | Sbjct 1297 ATAAATCTGTTGGTTTTTTGTCCCACATGTCATACTGCAAAATGCCTTTACTAACTGGGC 1356 Query 62569 ATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATG 62628 | ||| |||| || || || | ||||| | || || | |||| ||| || || || | Sbjct 1357 AGCCTTCATAAGTCTCATAGGTGCCTTCAATTTCGGCCAATTCAGTACTAGCTTCCAAGG 1416 Query 62629 CACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATC-TTGTGCTTCCAGGCTATCA 62687 |||| |||||||| || ||||| || || || || || ||| ||||| ||| || Sbjct 1417 CACCATAATAAATCGTCTCGAAAAT-TTGTTGGTTCAATAATTGGGCTTCTTCGCTCTCG 1475 Query 62688 AATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGT 62747 | || ||| | || ||||| || || || | || ||||| ||||| || || || Sbjct 1476 TAAGGGTAACGCATTAGGATAAATGCATCAGCCATGCCCTGAACGCCAATTCCAATGGGA 1535 Query 62748 CTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATT 62807 | ||||||| |||| || || ||||||||| || |||||| | || | ||| || ||| Sbjct 1536 CGATGTCTCATATTCGATGTTCTAGCTTCTGGGATCGGATAAAAGTTGACATCAATGATT 1595 Query 62808 TTATTGAGATTTCTGACAATTAC---TTTGACCACATCCTTCAGTTTGAGAAAATCAAA- 62863 ||||| | |||| | |||| ||| || || |||| ||| |||||||| Sbjct 1596 TTATTCAAATTTTTCG---TTACGGTTTTTGTGACTTCTTTCAATTTCTTGAAATCAAAC 1652 Query 62864 --TCGCCCATCTATTACAAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACC 62921 | ||| | |||||||| |||||||||| || |||| |||||| ||||| || Sbjct 1653 GTTTTTTCATTAGTAACAAACATATTCAAGGCAATTGAGGCCAAATTACAGACGGCAACT 1712 Query 62922 TCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCT 62981 |||| | | ||||| | ||||| || || | || || || || || ||||| Sbjct 1713 TCATCTTTACTTGAATATTCGACAATCTCTGTACACAAGTTGCTGCATTTAATGGTTCCA 1772 Query 62982 AAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCA 63041 | ||||||||| ||| ||| ||||||| || || || || || || | || ||||| Sbjct 1773 ATATTTTGTTGGTTAGATTTTCTGTTACAAGCGTCTTTGTAGAGCATATAAGGCGTACCC 1832 Query 63042 GTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTAT-TATAGATTT 63100 ||||||| |||||||| ||||| || ||||| | | | ||||| || | || | Sbjct 1833 GTTTCAACTTGAGATTCAATAATGGCAAACCAGAGGTCCTGTGCCTTAATCTGGCGAATA 1892 Query 63101 GTATCTCCTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATT 63160 | |||| || |||| ||| |||| |||||| ||| ||||| || ||||| | Sbjct 1893 AAACGACCTT-CTTTTTCATATTGTGTGTACAATTTTTCAAACTCCTCACCCCATGTGTC 1951 Query 63161 GTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCG 63220 || | ||||| || |||| || |||||||| |||| | | | | || || | Sbjct 1952 GTGTAGACCAGGGCACTCATGAGGGCACATCAAACTCCACATTTCATTAGACTCGACCCT 2011 Query 63221 TTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTC 63280 || |||||| | ||| || |||||||| || | ||||| ||| | | || ||| || Sbjct 2012 TTGCATAAACAAATCTGGGATCCAAAGGGCGAAAAATAAATCACGAGCCCTTCCTTCTTC 2071 Query 63281 GTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAA 63340 || || ||||| || || | || |||||| | | || || ||||| ||||| | Sbjct 2072 CTTGCCCGTATTTTTCTTCAAGTCTAGGAACTCGAAAACGTCCCCGTGCCAAGGTTCAAG 2131 Query 63341 GTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTT 63400 || ||||| | | | ||||| | || || || ||||| || | ||| | ||| || || Sbjct 2132 ATAAATGGCAAAAGCGCCAGGTCTCTTATTACCACCCTGGTCCACGTAACGAGCCGTATT 2191 Query 63401 ATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATA 63460 || || |||| ||||||||| | | || ||||| || || || ||||||| |||||| Sbjct 2192 GTTGTACACTCGCAACATTGGTACTAGGCCATTTGAAATGCCGTTAGTACCGGCGATATA 2251 Query 63461 GCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGAT 63520 |||| |||| |||||| || ||| || ||||| ||||| |||||| | Sbjct 2252 AGTTCCCTTGGCCCGAATACAGTGAACATTTAGGCCAATTCCGCCTGCAGATTTAGATAC 2311 Query 63521 TAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCAT-GTTAA 63579 || || || | || || || || || || ||||| || |||||||| |||| || || Sbjct 2312 TAGCGCACACTGCTTCAAGGTATCGTAAATGCCCTCAATACTATCATCACTCATCGTCAA 2371 Query 63580 GTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAG 63639 |||| || | |||| || ||||| || |||| ||| || ||||| || | Sbjct 2372 TAAGAAGCAAGAT-GACAACTGAGGACGAGGGGTGGCCGCTGCAAACAATGTAGGCGACG 2430 Query 63640 CGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCC 63699 | || || || | |||||| | || || ||||||||||| || ||||| || ||| Sbjct 2431 CATGAGTGAAATAACGTTCAGACAACAGGTTATACGTCTCAATGGCAGAGTCAATGTCCT 2490 Query 63700 ATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGT 63759 |||||| ||||| || || | ||| ||||| ||||| || | || || | || Sbjct 2491 CCCCATGAATGCCTACAGCTACTCTCATCAACATATGCTGTGGACGCTCCACAACTTTCC 2550 Query 63760 TGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAA 63819 || || |||||||| || ||| |||||| ||||| || || ||||| ||||| || Sbjct 2551 CCTTAATCTTCAACAAATAAGATCGTTCCAAGGTTTTGAAGCCGAAATAATTGTAGCCAA 2610 Query 63820 AGTCTCGTTCGTAAATAATAACCGAGTT 63847 | || || |||||||| || |||| || Sbjct 2611 AATCACGATCGTAAATGATGGCCGAATT 2638 >seq1270 Length=21014 Score = 197 bits (218), Expect = 2e-45 Identities = 372/542 (69%), Gaps = 5/542 (1%) Strand=Plus/Minus Query 33013 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33072 || || ||||| || || |||||||| ||||| || || ||||| | ||| ||| | Sbjct 10759 TTCTGATATTCGCCGACTTTCTTTTCGAAGAAATTCGTCTTGCCTTCTAGTGAAATAGAT 10700 Query 33073 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTC-AGAAAT 33131 |||||||||| || ||||| || || |||||| | | ||||||||| | ||| Sbjct 10699 TCCATGAAATTGAATGGATTTTTAGTGTTGTAAATTCGTCCGACTCCCAATTCTATCAAT 10640 Query 33132 CAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 33191 | ||| || || |||||||| |||||| | ||| | || |||||||| || | | Sbjct 10639 -AGTCTGTCAGCAACGAATTCAATATATTCTGACATAAGTTTGCAATTCATGCCAAGCAT 10581 Query 33192 TTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAAT 33251 | |||||| | || | || | ||||| |||||||| || || || ||||| Sbjct 10580 ATCAACTGGTAAGGCATCTGTTAAGAATTCCTGTTCAATTTCAACAGCTTCACGGATAAT 10521 Query 33252 AGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGAA 33311 | | |||||| | ||| || | ||| | ||||| | || || || Sbjct 10520 TTCGATGATTCTTTCTTTTGTTGGTTTCTGGACTAAGTAACGGAACATAAGGCAGGCAAA 10461 Query 33312 ATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCAT 33371 |||||||| | || || || | | ||| |||||||| || || || || || ||||| Sbjct 10460 GTCGCAGTGTAATCCTTCATCACGAGAAATGAGTTCGTTTGAGAATGTCAGACCAGGCAT 10401 Query 33372 TAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTC 33431 |||||||| || |||||||| || |||||||| || ||| ||||| |||||||| Sbjct 10400 AAGGCCACGTTTCTTAAGCCAGAAAATGGAAGCAAAACTTCCGCTGAAGAAAATTCCTTC 10341 Query 33432 TACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCA-TG--TATCCACTT 33488 || |||||||| || |||| | ||||| ||| |||| | | | || |||||| | Sbjct 10340 GACGGCAGCAAATGCTATAATGCGTTCTCCGTAATTGGCGTTCTGACTGCATATCCATTG 10281 Query 33489 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATA 33548 ||||||||||||||||||||| ||||| || | || || | ||||| || |||| Sbjct 10280 AATAGCCCAATCGGCCTTCTTTTTGACACATGGAAGGGTCTCAACTGCATTGAATAGATG 10221 Query 33549 GT 33550 || Sbjct 10220 GT 10219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622318358162120