Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq71022 140 3e-28 seq7849 138 1e-27 seq3660 98.7 9e-16 seq144 98.7 9e-16 seq31860 96.9 3e-15 seq36344 89.7 5e-13 seq25532 86.0 6e-12 >seq71022 Length=3779 Score = 140 bits (154), Expect = 3e-28 Identities = 700/1097 (64%), Gaps = 30/1097 (3%) Strand=Plus/Plus Query 147114 ACGGTGAATTGAATCGTGTTTGCTGCGGGTTTGGTTCTCAAATAGTACATGCCCGTTTTT 147173 ||||| |||||||| | || | || ||||| |||| |||||| ||||| || |||||| Sbjct 777 ACGGTAAATTGAATGGCATTAACGGCTGGTTTTGTTCGCAAATAATACATTCCAGTTTTT 836 Query 147174 AAACCCTTTTCCCA--AGAATAGTCGTGAATGGATGATAAAACTTTATAGGTTGGATTGG 147231 ||||| || ||| ||| | |||||| || | || | ||| | || | || Sbjct 837 AAACCAGATTTCCAGCCGAAAA--AGTGAATTGAGGTTAGTTTTCCATAATTGGGCTCGG 894 Query 147232 CCACAAAAAGATTGAGCGATTGGCTCTGATCGATGTAAGGTCCCCGCTCTGCGGCCATGT 147291 | ||| || |||| || ||| |||||||||| | | ||| || ||||| ||||| | Sbjct 895 CGACATGAATGTTGAATGACTGGGACTGATCGATGAATGCTCCTCGATCTGCAGCCATTT 954 Query 147292 CCAACACTACTTTTTGTTTAATTTCCCAAGCGGTCTTGAAGAGCGCCTTGATATTGTGTG 147351 | | ||||| || ||||||| |||| ||| | | | || | || Sbjct 955 TTATGGCCACTTTGACCGAAACTTCCCAAACGGTTTTGTACAATTCACGAATGTCAAATG 1014 Query 147352 GAATTTCATCAATATTTTGTACAGATCCGTTGTTTTTAATAATTTTTATCATGATATC-- 147409 ||||||| ||||||||||| | || ||||| || | |||||| | | ||||| Sbjct 1015 GAATTTCTTCAATATTTTGAATGGAACCGTTATTGGCCAAAATTTTATTTTTCATATCAT 1074 Query 147410 TGTCGAATATA---CGTTGGTGTCTACGAGTTTATCGACGAGATGCTGATTGACCACTTG 147466 ||| ||| | |||| || || |||| | | ||| |||||||| || || Sbjct 1075 CGTCCCATAAATCGCGTT-CAGT-TAAATCTTTA---AGCAAATGATGATTGACAACCTG 1129 Query 147467 ATACTCGCCCGACAGAACTCTTCGTACGTACAAATTACTAGTAAACGGCTCGAACGACTC 147526 | || ||||| || || | ||| ||| | || || | || || || || || Sbjct 1130 GAATTCACCCGATAGGACACGTCGATTGTAGACGTTTGATGTGTAAGGTTCAAATGATTC 1189 Query 147527 GTTGTTACCTAGAATCTGTGCAGTCGTTGCCGTCGGCATGTAAGCAATCAATAATGAATT 147586 ||||| || ||||| |||||||||| || || ||||| || | | || ||||| Sbjct 1190 ATTGTTTCCGAGAATTTGTGCAGTCGAAGCGGTTGGCATTGGTGCCAAAAGTAGGGAATT 1249 Query 147587 GCGTAAGCCGTGCATAGCCATTTCTC-GCTTAAGCTCGTCCCAGTTCCAAAGATCATTCG 147645 | | | | || | | || || || |||| | || ||||| ||||| | ||| | Sbjct 1250 TC-TGATACCTGTTTTGGCAATTTTCTGCTTCAATTCATCCCAATTCCATAAATC---TG 1305 Query 147646 ATTGGTTAATATTCCACAAATCAAACTGTAAAAGTCCACAACTTGCAGGGCTTCCATCGT 147705 | | || | | ||||| ||| |||| |||| || ||| | |||| || || | Sbjct 1306 TTGGTTTTTTGTCCCACATGTCATACTGCAAAATGCCTTTACTAACTGGGCAGCCTTCAT 1365 Query 147706 AAGAATCGTATGTTCCGTGCAGTTTAGCTAGTTCGATACTTTGACTT--AGTGCACCATA 147763 ||| || || || || | | || || | ||| ||| | ||| | |||||||| Sbjct 1366 AAGTCTCATAGGTGCCTTCAATTTCGGCCAATTCAGTAC--TAGCTTCCAAGGCACCATA 1423 Query 147764 ATAAATAGTTTCTGAAATCTTTTTATTTAAATCTCTAGCCTCTTGGCTGTCGTAGGGCAT 147823 |||||| || || |||| | || || || | || |||| ||| ||||| || Sbjct 1424 ATAAATCGTCTCGAAAATTTGTTGGTTCAATAATTGGGCTTCTTCGCTCTCGTAAGGGTA 1483 Query 147824 ATCCAAAATGGCGAACGTATCCGCAAGTCCTTGAATACCGATACCGATGGGTCGGTGTCT 147883 | || | | || | ||| || | || |||| || || || ||||| || ||||| Sbjct 1484 ACGCATTAGGATAAATGCATCAGCCATGCCCTGAACGCCAATTCCAATGGGACGATGTCT 1543 Query 147884 GAAATTCGATGCTTGAGCGCTAGCCAACGGATAAAAATTCAAGTCGATAATTTTATTGAG 147943 | |||||||| | ||| | | ||||||||| || | || || |||||||| | Sbjct 1544 CATATTCGATGTTCTAGCTTCTGGGATCGGATAAAAGTTGACATCAATGATTTTATTCAA 1603 Query 147944 ATTATTGGTAACCACTCTAGATACATTGTAGAGCGACTTAAAGTCGAAGCTTTTAAACTG 148003 ||| || || || | | | || | | | ||| || || || |||| | Sbjct 1604 ATTTTTCGTTACGGTTTTTGTGACTTCTTTCAATTTCTTGAAATCAAACGTTTT---TTC 1660 Query 148004 TTTATTGGCAAAATTATTTACGGCAATCGAGGCCAAGTTACACACGGCCGTTTC-TCGAT 148062 ||| | |||| |||| | |||||| |||||||| ||||| ||||| ||| || | Sbjct 1661 ATTAGTAACAAACATATTCAAGGCAATTGAGGCCAAATTACAGACGGCAACTTCATCTTT 1720 Query 148063 TGTCGCTATATTGAACGATTTCGGCACACAGATTGCTGTTTCGAATCACTCCCTCGtttt 148122 | | ||||| || || || | ||||| |||||| | ||| ||| |||| Sbjct 1721 ACTTG-AATATTCGACAATCTCTGTACACAAGTTGCTGCATTTAATGGTTCCAATATTTT 1779 Query 148123 tttGATTATTTTTATTGTTA-ACGTGATCTTTAAACATCATGTATGGAGCTCCGGTCTCG 148181 ||| ||| ||| ||||| | | | ||||| | | ||| || || | || || || Sbjct 1780 GTTGGTTAGATTTTCTGTTACAAGCG-TCTTTGTAGAGCATATAAGGCGTACCCGTTTCA 1838 Query 148182 ACTTGAGTCTCAATAAT 148198 ||||||| |||||||| Sbjct 1839 ACTTGAGATTCAATAAT 1855 >seq7849 Length=1912 Score = 138 bits (152), Expect = 1e-27 Identities = 151/201 (75%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 71672 ACGCATGATGAACTATGGAATGCTGCTCAGCGACAGCTACGCAATGAGGGTAAAATTCAC 71731 || ||||| || |||||||| | || ||| ||||||| || || ||||| ||| Sbjct 1598 ACCCATGACGATTTATGGAATTCAGCACAGATACAGCTAGTTCGAGAAGGAAAAATGCAC 1657 Query 71732 GGATACCTACGCATGTACTGGGCCAAAAAGATTCTCGAGTGGACTCAAACTCCCGAGCAG 71791 || | |||| |||||||||||||| ||||| | |||||||| |||| || || || Sbjct 1658 GGCTTTTTACGTATGTACTGGGCCAAGAAGATATTAGAGTGGACAGAAACACCAGAACAA 1717 Query 71792 GCGCTCGAGTATTCTATTTATCTAAACGATAGATACAGTCTCGACGGTCGCGATCCTAAC 71851 || || ||||| | || ||| |||| ||| | |||||||| || || | || |||||| Sbjct 1718 GCACTAGAGTACGCAATATATATAAATGATCGTTACAGTCTTGATGGAAGAGACCCTAAC 1777 Query 71852 GGTTATGTCGGTTGCATGTGG 71872 || |||||||||||||||||| Sbjct 1778 GGATATGTCGGTTGCATGTGG 1798 >seq3660 Length=14069 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || || || || |||||||| | ||||| | ||| | ||| | Sbjct 2291 ATGCAAATCTTCGTCAAGACTTTGACTGGAAAGACAATCACATTGGAAGTTGAAGCTTCG 2350 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || || || || | ||||| |||||| || || ||||| || || || |||||| Sbjct 2351 GATACTATTGAAAATGTCAAGGCTAAGATTCAAGAGAAGGAAGGAATCCCACCAGATCAA 2410 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | | |||| | ||||||||| | ||||||| |||| | ||||||| ||| Sbjct 2411 CAACGCTTGATTTTTGCTGGCAAACAATTGGAAGATGGCAGAACATTGGGCGACTACAAC 2470 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 |||||||| ||||| || | ||| ||||||| Sbjct 2471 ATTCAAAAGGAATCGACATTGCATTTGGTCCT 2502 >seq144 Length=14776 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || ||||| ||||| |||||| ||||||| | ||| | ||| | Sbjct 13314 ATGCAAATTTTCGTCAAAACCTTAACCGGAAAAACGATCACATTGGAAGTCGAACCTTCG 13373 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || || || || | || ||| ||||| ||||||||||| || ||||| ||||| Sbjct 13374 GATACTATTGAAAACGTGAAAGCTAAGATCCAAGACAAAGAAGGTATTCCTCCAGATCAG 13433 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | | |||| || || |||||| | ||||||| | | | ||||| ||| Sbjct 13434 CAGCGTTTGATTTTCGCTGGAAAACAATTGGAAGATGGACGTACTTTGTCTGACTACAAC 13493 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| ||||| |||||| | ||| ||||||| Sbjct 13494 ATTCAGAAAGAGTCTACTTTGCATTTGGTCCT 13525 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| |||||||| || |||||| | ||||| | ||| | || | Sbjct 13542 ATGCAGATTTTTGTTAAAACATTGACAGGAAAAACCATCACTTTGGAAGTCGAGCCCTCG 13601 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || || || || | || || ||||| ||||||||||| || ||||| |||||| Sbjct 13602 GATACTATTGAAAACGTTAAGGCCAAGATCCAAGACAAAGAAGGTATTCCTCCAGATCAA 13661 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAAC--GTCAGCGACTATA 26946 ||| | ||||||| || || || ||| | ||||||| | | | |||| ||||| | Sbjct 13662 CAACGTCTCATTTTCGCTGGAAAGCAATTGGAAGATGGACGTACCTTGTCA--GACTACA 13719 Query 26947 ACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 |||||||||| || || || | ||| ||||||| Sbjct 13720 ACATTCAAAAGGAGTCGACATTGCATTTGGTCCT 13753 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||| |||||||| || || ||| | || ||| | ||| | ||| Sbjct 7702 ATGCAAATCTTTGTCAAAACATTGACCGGTAAAACCATAACCTTAGAAGTTGAAGGTTCT 7643 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || |||| ||| | || || |||||| || || ||||| || ||||| |||||| Sbjct 7642 GATTCCATTGAGAATGTTAAGGCCAAGATTCAAGATAAGGAAGGAATTCCTCCAGATCAA 7583 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | ||||||| || || || ||| | ||||| | | | | | ||||| ||| Sbjct 7582 CAACGCCTCATTTTCGCTGGAAAGCAATTGGAAGACGGACGTACCCTATCTGACTACAAC 7523 Query 26949 ATTCAAAAAGAATCTA 26964 ||||||||||||| || Sbjct 7522 ATTCAAAAAGAATGTA 7507 >seq31860 Length=14314 Score = 96.9 bits (106), Expect = 3e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 26844 GTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTAC 26903 |||||| |||||| || |||||||| || || || ||||| |||||| | |||| Sbjct 1137 GTCAAATTGAAGATTCAGGATAAAGAAGGCATCCCACCAGATCAGCAAAGATTGATTTTT 1196 Query 26904 GGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCT 26963 | ||||||||| | ||||||| | || | |||||||| |||||||||||||| || Sbjct 1197 GCTGGCAAACAATTGGAAGATGGCAAAACACTTAGCGACTACAACATTCAAAAAGAGTCC 1256 Query 26964 ACTATCCATCTGGTCCTGAGA 26984 || | ||| ||||||| ||| Sbjct 1257 ACATTGCATTTGGTCCTAAGA 1277 >seq36344 Length=11671 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || || || || ||||||||| | || || | ||| | ||| | Sbjct 676 ATGCAAATATTCGTCAAGACTTTGACTGGAAAAACTATTACATTGGAAGTCGAACCGTCA 735 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| || ||| | || ||| || ||| ||||||||||| || || || || ||| Sbjct 736 GACACAATTGAGAATGTAAAAGCTAAAATTCAAGACAAAGAAGGAATCCCCCCAGACCAA 795 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | | |||| | ||||| ||||||||||| | | | | | |||||| ||| Sbjct 796 CAACGTTTGATTTTTGCTGGCAAGCAACTCGAAGACGGACGTACCTTGTCCGACTACAAC 855 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || || || ||||| || | ||| ||||||| Sbjct 856 ATCCAGAAGGAATCAACATTGCATTTGGTCCT 887 >seq25532 Length=5913 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/232 (68%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || |||||||| || ||||| | || || | ||| | || || | Sbjct 1144 ATGCAAATTTTCGTTAAAACATTGACAGGAAAGACAATAACGCTTGAAGTTGAGGCAGCC 1085 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| || || ||||| || ||| || |||||||| || || || |||||| Sbjct 1084 GACACGATTGAAAGTGTCAAGGGTAAAATTCAGGATAAAGAAGGCATCCCACCAGATCAA 1025 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 |||||| | |||| | ||||||||| | ||||| | ||| | | | || || || Sbjct 1024 CAAAGATTGATTTTTGCTGGCAAACAATTGGAAGACGCTAGGACATTGGGTGATTACAAT 965 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAAAAA 27000 || || ||||| ||||| | || |||| || ||| | | || ||| ||| Sbjct 964 ATCCAGAAAGAGTCTACATTGCACTTGGTTCTCAGATTGCGCGGTGGACAAA 913 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478179208257040