Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq71022 152 1e-31 seq41364 143 7e-29 >seq71022 Length=3779 Score = 152 bits (168), Expect = 1e-31 Identities = 532/822 (65%), Gaps = 10/822 (1%) Strand=Plus/Minus Query 363443 TTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATG 363502 |||| || || || ||||||||||| ||| | || ||| | || || ||| | ||| Sbjct 2544 TTGTGGAGCGTCCACAGCATATGTTGATGAGAGTAGCTGTAGGCATTCATGGGGAGGACA 2485 Query 363503 TTGATGCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTATTCACGCACGCCACGC 363562 |||| | || ||||| || ||||| || | || ||| ||||| || || ||| Sbjct 2484 TTGACTCTGCCATTGAGACGTATAACCTGTTGTCTGAACGTTATTTCACTCATGCGTCGC 2425 Query 363563 CAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAA 363622 | ||| ||| || | || | | ||| ||| |||| |||||||| | | | | Sbjct 2424 CTACATTGTTTGCAGCGGCCACCCCTCGTCCTCAGTTGTCATCTTGCTTCTTATTGACGA 2365 Query 363623 TGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCA 363682 ||| || ||| || ||||| || | || || | ||| | ||||| || | || | Sbjct 2364 TGAGTGATGATAGTATTGAGGGCATTTACGATACCTTGAAGCAGTGTGCGCTAGTATCTA 2305 Query 363683 AGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGAACAGTTACATTC 363742 | ||||||||||||||| || | ||| | |||| || || | ||| || Sbjct 2304 AATCTGCAGGCGGAATTGGCCTAAATGTTCACTGTATTCGGGCCAAGGGAACTTATATCG 2245 Query 363743 GCGGCAC-AGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACT 363801 ||| || | || || || ||||| || || || ||| | || |||| ||||||| Sbjct 2244 CCGGTACTAACGGCAT-TTCAAATGGCCTAGTACCAATGTTGCGAGTGTACAACAATACG 2186 Query 363802 GCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAG 363861 || | ||||| ||||||||||| ||| | || || ||||| || ||||| || Sbjct 2185 GCTCGTTACGTGGACCAGGGTGGTAATAAGAGACCTGGCGCTTTTGCCATTTATCTTGAA 2126 Query 363862 CCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAA 363921 ||| || | || |||| ||||| || || | |||||| ||||| || || ||| Sbjct 2125 CCTTGGCACGGGGACGTTTTCGAGTTCCTAGACTTGAAGAAAAATACGGGCAAGGAAGAA 2066 Query 363922 TTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTG 363981 | || |||||| | || | || |||||| | | || |||||| | | || Sbjct 2065 GGAAGGGCTCGTGATTTATTTTTCGCCCTTTGGATCCCAGATTTGTTTATGCAAAGGGTC 2006 Query 363982 GAGGCAGGTAA-GAATTGGTCACTCT--TTTGCCCACACGAATGTCCAGGTCTTTCCGAT 364038 ||| | ||| ||| || | | | | ||||| || || || || ||||| ||| Sbjct 2005 GAGTC---TAATGAAATGTGGAGTTTGATGTGCCCTCATGAGTGCCCTGGTCTACACGAC 1949 Query 364039 GTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGT 364098 ||||||||| || | || | ||| | | |||||| || || | | | Sbjct 1948 ACATGGGGTGAGGAGTTTGAAAAATTGTACACACAATATGAAAAAGAAGG-TCGTTTTAT 1890 Query 364099 AAGACA-ATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGG 364157 | || ||| |||||| | || ||||||||||| || || || || |||| || || Sbjct 1889 TCGCCAGATTAAGGCACAGGACCTCTGGTTTGCCATTATTGAATCTCAAGTTGAAACGGG 1830 Query 364158 AACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGG 364217 || || |||||| | |||||||| | || ||| | || || ||||| || | |||| Sbjct 1829 TACGCCTTATATGCTCTACAAAGACGCTTGTAACAGAAAATCTAACCAACAAAATATTGG 1770 Query 364218 TACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATA 364259 || ||| | |||||| | ||||| |||||| | ||||| Sbjct 1769 AACCATTAAATGCAGCAACTTGTGTACAGAGATTGTCGAATA 1728 Score = 86.0 bits (94), Expect = 2e-11 Identities = 275/416 (66%), Gaps = 18/416 (4%) Strand=Plus/Minus Query 364750 GCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCG 364809 || || ||||| || ||||| |||||||| || ||||||||||| || | || ||||| Sbjct 1234 GCACCAATGCCAACCGCTTCGACTGCACAAATTCTCGGAAACAATGAATCATTTGAACC- 1176 Query 364810 TTTACA-AGCAATC-TTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATA 364867 ||||| | ||| | | || || || || || || || ||||| | ||| || ||| Sbjct 1175 -TTACACATCAAACGTCTACAATCGACGTGTCCTATCGGGTGAATTCCAGGTTGTCAATC 1117 Query 364868 AGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTATA 364927 | | | | || ||| | | || |||| | |||| || ||||| || | | Sbjct 1116 ATCATTTGCTTAAAGATTTAACTGAACGCGATTTATGGGACGATGATATGAAAAATAAAA 1057 Query 364928 TCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCA---GAAGATC-TGAAG 364983 | | ||| ||| ||||| | || || ||| || | ||||| || || |||| Sbjct 1056 TTTTGGCCAATAACGGTTCCATTCAAAATATTGAAGAAATTCCATTTGACATTCGTGAA- 998 Query 364984 CCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACT-CTCATTGATATGGCGGCCGA 365042 | ||||||||||| |||||| |||| | | || | ||| | ||||| || || Sbjct 997 ---TTGTACAAAACCGTTTGGGAAGTTTCGGT-CAAAGTGGCCATAAAAATGGCTGCAGA 942 Query 365043 TCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTC--AGCCAACC 365100 ||| || || || ||| |||| |||||| || ||| ||||||| | | |||| | Sbjct 941 TCGAGGAGCATTCATCGATCAGTCCCAGTCATTCAAC--ATTCATGTCGCCGAGCCCAAT 884 Query 365101 TCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGG 365156 | | || || || || || || || | ||| |||||||| ||| | || || || Sbjct 883 TATGGAAAACTAACCTCAATTCACTTTTTCGGCTGGAAATCTGGTTTAAAAACTGG 828 >seq41364 Length=3858 Score = 143 bits (158), Expect = 7e-29 Identities = 254/360 (71%), Gaps = 14/360 (4%) Strand=Plus/Plus Query 111360 GAAGAACTTCTGTGGTTTATTCGCGGAAGTACAAATGCAAATGAACTTGCAGCA-AAAAA 111418 || ||||| || ||||||||| || |||||||||| || || || ||| | ||||| Sbjct 1909 GAGGAACTACTTTGGTTTATTAAGGGTAGTACAAATGTCAAGGAT-TTACAGGAGAAAAA 1967 Query 111419 TGTAAAAATTTGGGATGGAAATGGATCACGTGACTTTCTAGATTCAGTTGGTCTTGTCGA 111478 ||| ||||||||||| || | | ||||| | | |||| || | || | ||| Sbjct 1968 TGTTCGCATTTGGGATGGCAACAGTACCCGTGAATATTTAGACTCTTTAGGATTGACCGA 2027 Query 111479 CAACGAAGAAGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGA 111538 | || || ||||| | ||||||||||| || ||||||||||| || || || ||||| Sbjct 2028 TAGAGAGGAGGGTGACTTGGGACCAGTTTATGGCTTTCAATGGCGTCATTTCGGGGCAGA 2087 Query 111539 CTACAAAACCATGCACGACTCATATGATTCA---CAGGGAACTGATCAATT-ACAGAATG 111594 ||||||||| ||||| || ||||| || ||| |||||||| | ||| | Sbjct 2088 ATACAAAACCTGTCACGA---TGATTATTCAGGCCAAGGAGTCGATCAATTGTCCGAA-G 2143 Query 111595 TCATTGATCAAATTAAGAAC--AACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAA 111652 ||||| | |||||| ||| ||||| || |||||| |||||||||||||| ||||| Sbjct 2144 TCATTAACAGAATTAA-AACGAAACCCCAC-GATCGTCGAATTATTATGAGTGCCTGGAA 2201 Query 111653 CCCAAATGCATTGGAAAAAATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTATGT 111712 ||| | | | ||||||||| | ||||| || || | || ||||||||| || Sbjct 2202 CCCGATGGACCTACCAAAAATGGCCTTACCACCCTGCCACTGTTTGGCCCAGTTTTACGT 2261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302005021251974