Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq31860 136 3e-27 seq25532 111 1e-19 seq144 111 1e-19 >seq31860 Length=14314 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| || | ||||| || || |||||||| || || | ||| | ||| | Sbjct 1062 ATGCAAATATTCATTAAAACCCTAACCGGAAAAACAATAACACTTGAAGCTGAGGGCTCA 1121 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || || ||| | | || ||| || ||| |||||||||||| |||| |||||| Sbjct 1122 GATTCTATTGAAAATGTCAAATTGAAGATTCAGGATAAAGAAGGCATCCCACCAGATCAG 1181 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 |||||| | |||| ||| ||||||||||| ||||||| |||||| | ||| || ||| Sbjct 1182 CAAAGATTGATTTTTGCTGGCAAACAATTGGAAGATGGCAAAACACTTAGCGACTACAAC 1241 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGA 115513 |||||||||||||| || | ||| |||| | |||||||| || ||| Sbjct 1242 ATTCAAAAAGAGTCCACATTGCATTTGGTCCTAAGATTGCGCGGCGGA 1289 >seq25532 Length=5913 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||||||||| || ||||| | || ||||| || || || | ||| ||| | | Sbjct 1144 ATGCAAATTTTCGTTAAAACATTGACAGGAAAGACAATAACGCTTGAAGTTGAGGCAGCC 1085 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||||| ||| | || || |||||| |||||||||||| |||| ||||| Sbjct 1084 GACACGATTGAAAGTGTCAAGGGTAAAATTCAGGATAAAGAAGGCATCCCACCAGATCAA 1025 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 |||||| | |||| ||| ||||||||||| ||||| | | || ||| ||||| || Sbjct 1024 CAAAGATTGATTTTTGCTGGCAAACAATTGGAAGACGCTAGGACATTGGGTGATTACAAT 965 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAAAA 115516 || || ||||||||||| | || |||| | |||||||| || ||| || Sbjct 964 ATCCAGAAAGAGTCTACATTGCACTTGGTTCTCAGATTGCGCGGTGGACAA 914 >seq144 Length=14776 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||||||||| ||||| ||| | || ||||| |||||||| | || ||| | | Sbjct 12974 ATGCAAATTTTCGTCAAGACGTTGACTGGAAAGACCATTACATTGGAGGTTGAGCCTTCC 13033 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||||| ||| | | || ||| || ||| ||||| ||||| ||||| |||||| Sbjct 13034 GACACCATTGAAAACGTTAAAGCCAAGATTCAAGATAAGGAAGGTATCCCCCCAGATCAG 13093 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 ||| | | || | ||| || |||||||| ||||||| ||| || | ||||||||| Sbjct 13094 CAACGTTTGATCTTTGCTGGAAAACAATTGGAAGATGGACGTACCCTGTCAGATTATAAC 13153 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGT 115494 ||||| |||||||| || | ||| |||| Sbjct 13154 ATTCAGAAAGAGTCGACATTGCATTTGGT 13182 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| || || ||||| | || || |||||||| ||| | ||| ||| || Sbjct 14226 ATGCAAATCTTCGTGAAAACCTTAACTGGCAAAACCATCACCTTGGAAGTCGAGCCCTCG 14285 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||||| | | | | || ||| |||||| ||||| ||||| |||| ||||| Sbjct 14286 GACACAATCGAAAATGTTAAAGCTAAAATTCAAGATAAGGAAGGTATCCCTCCAGATCAA 14345 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || | | |||| ||| ||||||||||||||||||| | || || | || || || Sbjct 14346 CAGCGTTTGATTTTTGCCGGCAAACAATTAGAAGATGGCCGTACATTGTCAGACTACAAT 14405 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGT 115494 || ||||| ||||| || | ||| |||| Sbjct 14406 ATCCAAAAGGAGTCGACATTGCATTTGGT 14434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424925365402840