Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq71022 208 7e-49 seq144 123 2e-23 seq36344 102 8e-17 >seq71022 Length=3779 Score = 208 bits (230), Expect = 7e-49 Identities = 968/1509 (64%), Gaps = 38/1509 (3%) Strand=Plus/Plus Query 145055 TGATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAG 145114 |||||||| ||||| || || || | | ||||| || || ||||| || ||| | Sbjct 1116 TGATTGACAACCTGGAATTCACCCGATAGGACACGTCGATTGTAGACGTTTGATGTGTAA 1175 Query 145115 GGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCC 145174 |||||||| || || || || || || ||||| || |||| ||||| ||||| ||| Sbjct 1176 GGTTCAAATGATTCATTGTTTCCGAGAATTTGTGCAGTCGAAGCGGTTGGCATTGGTGCC 1235 Query 145175 ACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTC--CTTTAGCGTACCCCAAT 145232 | | || ||||| | | || || || | | | ||| ||| | | |||||| Sbjct 1236 AAAAGTAGGGAATTTCTGATACC-TGTTT-TGGCAATTTTCTGCTTCAATTCATCCCAAT 1293 Query 145233 CCCATAGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGG 145292 ||||| || || | |||||||||||| |||||||||||||| | || | | Sbjct 1294 TCCATAAATCTGTTGGTTTTTTGTCCCACATGTCATACTGCAAAATGCCTTTACTAACTG 1353 Query 145293 GGCTGCCTTGAAAGGAACTGTAACTGCCCCAAGTTTTGGCGAGCTCGCAACTCGCCTCCA 145352 ||| ||||| | | | || |||| | ||| ||| | || ||| || |||| Sbjct 1354 GGCAGCCTTCATAAGTCTCATAGGTGCCTTCAATTTCGGCCAATTCAGTACTAGCTTCCA 1413 Query 145353 GAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCT 145412 || || ||||||| |||||| |||||| ||| | | ||||| ||||||| Sbjct 1414 AGGCACCATAATAAATCGTCTCGAAAATTTGTTGGTTCAATAATTGGGCTTCTTCGCTCT 1473 Query 145413 CGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGG 145472 |||| || |||| || | ||| ||||| || | ||||| | || | || |||| Sbjct 1474 CGTAAGGGTAACGCATTAGGATAAATGCATCAGCCATGCCCTGAACGCCAATTCCAATGG 1533 Query 145473 GCCGATGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGATATCGATTACGGTCGATAA 145532 | |||||| |||| || | || || ||| ||||| || || || | Sbjct 1534 GACGATGTCTCATATTCGATGTTCTAGCTTCTGGGATCGGATAAAAGTTGACATCAATGA 1593 Query 145533 TTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAGTCAAACC 145592 |||||||||| ||| | ||| ||||| | | ||| || | || |||||| Sbjct 1594 TTTTATTCAAATTTTTCGTTACGGTTTTTGTGACTTCTTTCAATTTCTTGAAATCAAAC- 1652 Query 145593 GAGCCTCGTCA--ACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAACTGC 145650 | | ||| | | || ||| |||| | ||| || || ||||||||||| || || Sbjct 1653 --GTTTTTTCATTAGTAACAAACA--TATTCAAGGCAATTGAGGCCAAATTACAGACGGC 1708 Query 145651 --CGTCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATG 145708 | || || | | |||| || ||||| | ||||| ||||| ||||| ||| Sbjct 1709 AACTTCATCTTTACTT--GAATATTCGACAATCTCTGTACACAAGTTGCTGCATTTAATG 1766 Query 145709 GTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGT 145768 ||||| | |||||| || ||| ||| ||||| || ||||| ||||||||||| || || Sbjct 1767 GTTCCAATATTTTGTTGGTTAGATTTTCTGTTACAAGCGTCTTTGTAGAGCATATAAGGC 1826 Query 145769 CCGCCAGTCTCCACCTGCGTCTCCACGAT---AAAACGGTGCAAGTCCTGCGCACGCACC 145825 || || || || || | || | || ||| | | | |||||| || | | Sbjct 1827 GTACCCGTTTCAACTTGAGATTCAATAATGGCAAACCAG---AGGTCCTGTGCCTTAATC 1883 Query 145826 TGCTGCTGGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGAACCG 145885 || | | || || |||| ||| |||| |||| | | |||||| | ||| Sbjct 1884 TGGCGAATAAAACGACCTTCTTTTTCATATTGTGTGTACAATTTTTCAAACTCCTCACCC 1943 Query 145886 TAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTTGGCG 145945 | ||| || || || |||| | || ||||||| ||| | | || | Sbjct 1944 CATGTGTCGTGTAGACCAGGGCACTCATGAGGGCACATCAAACTCCACATTTCATTAGAC 2003 Query 145946 TTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGCGCGCTTTG 146005 | ||| | | ||||||||||||||| | ||| || ||| | | || || || || | Sbjct 2004 TCGACCCTTTGCATAAACAAATCTGGGATCCAAAGGGCGAAAAATAAATCACGAGCCCTT 2063 Query 146006 CAATCCTCAGCACCCATGTTTCGCTTCAAAT-TAAGCACACTATAGATGTCCGCGTGCCA 146064 | || || ||| | ||| |||||| | || | || | | | | |||| ||||||| Sbjct 2064 CCTTCTTCCTTGCCCGTATTTTTCTTCAAGTCTAGGAACTCGA-AAACGTCCCCGTGCCA 2122 Query 146065 CGGTTCAATATAGACGGCGAGGGCTCC--TTTTCGT-TTGCCACCCTGGTCCACGTGACG 146121 ||||||| ||| | ||| | || || | || | || |||||||||||||||| ||| Sbjct 2123 AGGTTCAAGATAAATGGCAAAAGCGCCAGGTCTCTTATTACCACCCTGGTCCACGTAACG 2182 Query 146122 TACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTACGCCGTTCGTAGA 146181 || | ||||| | || |||| ||| || | | ||| | | | |||||| ||| Sbjct 2183 AGCCGTATTGTTGTACACTCGCAACATTGGTACTAGGCCATTTGAAATGCCGTTAGTACC 2242 Query 146182 GTTTATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGCCGAGACCGCCGCCGTA 146241 | || || || || || | || |||||||| | ||| | ||||| | | Sbjct 2243 GGCGATATAAGTTCCCTTGGCCCGAATACAGTGAACATTTAGGCCAATTCCGCCTGCAGA 2302 Query 146242 CTTGGATA-TAGCGGCGCAGT-CGCCGAGCGTCTCGTAGATGCCGTCAATGCTATCGCTT 146299 || |||| |||| || || | | | || || ||||| ||||| ||||| ||||| Sbjct 2303 TTTAGATACTAGC-GCACACTGCTTCAAG-GTATCGTAAATGCCCTCAATACTATCATCA 2360 Query 146300 CGAAT-GCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGGCGTCCCCGCCGAGAACAA 146358 | || | | | || ||||| || ||| ||| | || || |||| | ||||| Sbjct 2361 CTCATCGTCAATAAG-AAGCAAGATGACAACTGAGGACGAGGGGTGGCCGCTGCAAACAA 2419 Query 146359 CGTCGGGCTCGCGTGCGT-AAACATTTTTCGGCTCATCATCCGATACGTTTCGATAGCGT 146417 || || ||| || || ||| | ||| | || || |||||| || || || Sbjct 2420 TGTAGGCGACGCATGAGTGAAATAACGTTCAG-ACAACAGGTTATACGTCTCAATGGCAG 2478 Query 146418 CTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGAGCATGTGTTGGGGCCGCT 146477 | |||||| || ||||||||||| | ||| || | ||| | ||| || || || |||| Sbjct 2479 AGTCAATGTCCTCCCCATGAATGCCTACAGCTACTCTCATCAACATATGCTGTGGACGCT 2538 Query 146478 CCGCCACTTGATTGTCAATCTTTAACAAATA--GCCGTTCTCCAGGGTTTTGTATCCGAA 146535 || | |||| | |||||| |||||||| ||| |||| ||||||| | ||||| Sbjct 2539 CCACAACTTTCCCCTTAATCTTCAACAAATAAGATCGT--TCCAAGGTTTTGAAGCCGAA 2596 Query 146536 AAATTTGTA 146544 | | ||||| Sbjct 2597 ATAATTGTA 2605 >seq144 Length=14776 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || ||||| | ||||||||||||||||| ||||| ||| | Sbjct 14680 CCACCACGGAGACGGAGGACCAAATGCAATGTCGACTCCTTTTGAATATTGTAGTCGGAC 14621 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| || || | || || || ||| | || ||||||||||| || ||||| Sbjct 14620 AAAGTGCGGCCATCTTCCAATTGTTTACCGGCGAAAATCAAACGCTGCTGATCTGGAGGA 14561 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||||||||| ||| || ||| | | || | ||||| | || ||| | Sbjct 14560 ATACCTTCTTTGTCCTGGATCTTGGCCTTAACGTTTTCAATGGTATCTGAGGGCTCAACT 14501 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | ||||| || || | |||||| ||||||||||||||| Sbjct 14500 TCCAAGGTGATAGTTTTGCCAGTCAAAGTTTTAACGAAAATCTGCATG 14453 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || ||||| | ||||||||||||||||||||||| || | Sbjct 13768 CCACCACGGAGACGGAGGACCAAATGCAATGTCGACTCCTTTTGAATGTTGTAGTCTGAC 13709 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || || || | ||||| || ||| | || | ||| || || || ||||| Sbjct 13708 AAGGTACGTCCATCTTCCAATTGCTTTCCAGCGAAAATGAGACGTTGTTGATCTGGAGGA 13649 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||||||||| ||| || ||| | | || | |||||| | || ||||| Sbjct 13648 ATACCTTCTTTGTCTTGGATCTTGGCCTTAACGTTTTCAATAGTATCCGAGGGCTCGACT 13589 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | |||||| || || | ||||| || ||||||||||| Sbjct 13588 TCCAAAGTGATGGTTTTTCCTGTCAATGTTTTAACAAAAATCTGCAT 13542 Score = 105 bits (116), Expect = 6e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| || | ||| || || ||||| | |||||||||||||| || ||||| || Sbjct 14453 GCCACCACGGAGACGGAGTACCAAATGCAATGTCGACTCCTTTTGGATATTGTAGTCTGA 14394 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || || || || |||| || ||||| || | || |||||||| || || ||||| Sbjct 14393 CAATGTACGGCCATCTTCTAATTGTTTGCCGGCAAAAATCAAACGCTGTTGATCTGGAGG 14334 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGA 131185 ||| ||||| || || ||| ||| |||| | | | || | || || | || ||||| Sbjct 14333 GATACCTTCCTTATC-TTGAATTTTAGCTTTAACATTTTCGATTGTGTCCGAGGGCTCGA 14275 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | |||||| || |||| ||||| ||||| || |||||| Sbjct 14274 CTTCCAAGGTGATGGTTTTGCCAGTTAAGGTTTTCACGAAGATTTGCATG 14225 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || || | ||| || || ||||| | || ||||| || ||||| ||||| ||| Sbjct 12973 GCCTCCACGAAGACGGAGAACCAAATGCAATGTAGACTCTTTCTGAATATTGTAGTCGGA 12914 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||| || ||| || | |||||| || || |||| |||||||||||||| || || Sbjct 12913 CAAGGTACGTCCGTCTTCCAACTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCTGGTGG 12854 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| || || ||| || ||| | | ||| | ||||| | | ||||| Sbjct 12853 AATACCTTCCTTATCCTGGATCTTAGCCTTTACGTTCTCGATCGTATCAGATGGCTCGAC 12794 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| ||||| || | || || ||||| |||||||| Sbjct 12793 CTCCAAAGTGATGGTCTTACCAGTCAATGTCTTGACGAATATCTGCAT 12746 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| || | ||| || || ||||| | |||||||||||||| || ||||| || Sbjct 13997 GCCACCACGGAGACGGAGTACCAAATGCAATGTCGACTCCTTTTGGATATTGTAGTCAGA 13938 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || || || || |||| || || |||||| | || |||||||| || || || || Sbjct 13937 CAAAGTACGGCCATCTTCTAATTGTTTTCCTGCGAAAATCAAACGCTGTTGATCTGGTGG 13878 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| ||||| || || ||| || ||| | | ||| | ||||| | || ||||| Sbjct 13877 GATACCTTCCTTATCCTGGATCTTGGCCTTAACGTTCTCGATGGTATCCGAGGGCTCGAC 13818 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | |||||| || || | || || ||||| || ||||| Sbjct 13817 TTCCAAGGTGATGGTTTTGCCAGTCAATGTCTTGACGAAGATTTGCAT 13770 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || ||||| | || ||||| || ||||||||||| || | Sbjct 13540 CCACCACGGAGACGAAGGACCAAATGCAAAGTAGACTCTTTCTGAATGTTGTAGTCAGAC 13481 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || || | || || || ||| | || ||||||||||| || ||||| Sbjct 13480 AAAGTACGTCCATCTTCCAATTGTTTTCCAGCGAAAATCAAACGCTGCTGATCTGGAGGA 13421 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||||||||| ||| || || | | || | |||||| | | |||| Sbjct 13420 ATACCTTCTTTGTCTTGGATCTTAGCTTTCACGTTTTCAATAGTATCCGAAGGTTCGACT 13361 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||||| ||||||| ||||| |||||||| ||||| Sbjct 13360 TCCAATGTGATCGTTTTTCCGGTTAAGGTTTTGACGAAAATTTGCAT 13314 >seq36344 Length=11671 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || ||||| | || || ||||| || |||||||| ||| | Sbjct 902 CCACCACGGAGACGGAGGACCAAATGCAATGTTGATTCCTTCTGGATGTTGTAGTCGGAC 843 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || ||| || || |||||||| || | || ||||| || ||||| || ||| Sbjct 842 AAGGTACGTCCGTCTTCGAGTTGCTTGCCAGCAAAAATCAAACGTTGTTGGTCTGGGGGG 783 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 |||||||||||||| ||| ||| || || | | ||| | || || | | |||| Sbjct 782 ATTCCTTCTTTGTC-TTGAATTTTAGCTTTTACATTCTCAATTGTGTCTGACGGTTCGAC 724 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| ||||| || || | ||| || ||||| || ||||| Sbjct 723 TTCCAATGTAATAGTTTTTCCAGTCAAAGTCTTGACGAATATTTGCAT 676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471536320778880