Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq144 111 1e-19 seq3660 89.7 4e-13 >seq144 Length=14776 Score = 111 bits (122), Expect = 1e-19 Identities = 154/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||||| || ||||||||||| ||||||||||| | || ||| | || Sbjct 13753 AGGACCAAATGCAATGTCGACTCCTTTTGAATGTTGTAGTCTGACAAGGTACGTCCATCT 13694 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 |||||||| || || || |||| || || ||||| || ||| | || |||||||| Sbjct 13693 TCCAATTGCTTTCCAGCGAAAATGAGACGTTGTTGATCTGGAGGAATACCTTCTTTGTCT 13634 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || ||| || | | | ||| || |||||| ||||| ||||||| Sbjct 13633 TGGATCTTGGC--CTTAACGTTTTCAATAGTATCCGAGGGCTCGACTTCCAAAGTGATGG 13576 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||||| |||| ||||| |||||||||||||| Sbjct 13575 TTTTTCCTGTCAATGTTTTAACAAAAATCTGCAT 13542 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 ||||||| ||||| || ||||||||||| || |||||||| | || || | | || Sbjct 14437 AGTACCAAATGCAATGTCGACTCCTTTTGGATATTGTAGTCTGACAATGTACGGCCATCT 14378 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || ||||||||||| ||| |||| | |||||||| || ||| | || || || || Sbjct 14377 TCTAATTGTTTGCCGGCAAAAATCAAACGCTGTTGATCTGGAGGGATACCTTCCTTATCT 14318 Query 16844 GCAATTT--GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 ||||| ||| || || | | | ||||| |||||| ||||| |||||||| Sbjct 14317 TGAATTTTAGCT--TTAACATTTTCGATTGTGTCCGAGGGCTCGACTTCCAAGGTGATGG 14260 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| || || | ||||| || || || ||||| Sbjct 14259 TTTTGCCAGTTAAGGTTTTCACGAAGATTTGCAT 14226 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||||| || ||||||||||| || |||||||||| || || | | || Sbjct 14665 AGGACCAAATGCAATGTCGACTCCTTTTGAATATTGTAGTCGGACAAAGTGCGGCCATCT 14606 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 ||||||||||| || || |||| | ||||| || || ||| | || |||||||| Sbjct 14605 TCCAATTGTTTACCGGCGAAAATCAAACGCTGCTGATCTGGAGGAATACCTTCTTTGTCC 14546 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || ||| || | | | || || |||||| ||||| |||||| | Sbjct 14545 TGGATCTTGGC--CTTAACGTTTTCAATGGTATCTGAGGGCTCAACTTCCAAGGTGATAG 14488 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| || |||| ||||| || ||||||||||| Sbjct 14487 TTTTGCCAGTCAAAGTTTTAACGAAAATCTGCAT 14454 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 ||||||| ||||| || ||||| ||||| || |||||||| | || || | | || Sbjct 14209 AGTACCAAATGCAATGTCGACTCTTTTTGGATATTGTAGTCAGACAATGTGCGGCCATCT 14150 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 |||||||| || || || |||| | |||||||| || ||| | ||| || || || Sbjct 14149 TCCAATTGCTTTCCAGCGAAAATCAAACGCTGTTGATCTGGAGGGATGCCTTCCTTATCT 14090 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 ||||| ||| || | | | || || |||||| ||||| |||||||||| Sbjct 14089 TGAATTTTAGCCTTTACATTTTCAATGGTATCCGAGGGCTCGACTTCCAAGGTGATGGTT 14030 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || || | ||||| || || || ||||| Sbjct 14029 TTGCCAGTTAAGGTTTTCACGAAGATTTGCAT 13998 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/214 (69%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||||| || ||||| || || ||||||||||| | || || | || Sbjct 13525 AGGACCAAATGCAAAGTAGACTCTTTCTGAATGTTGTAGTCAGACAAAGTACGTCCATCT 13466 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 ||||||||||| || || |||| | ||||| || || ||| | || |||||||| Sbjct 13465 TCCAATTGTTTTCCAGCGAAAATCAAACGCTGCTGATCTGGAGGAATACCTTCTTTGTCT 13406 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || ||| ||||| | | | ||| || || || ||||| ||||| | Sbjct 13405 TGGATCTTAGCT--TTCACGTTTTCAATAGTATCCGAAGGTTCGACTTCCAATGTGATCG 13348 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||||||||| | |||||||| ||||| ||||| Sbjct 13347 TTTTTCCGGTTAAGGTTTTGACGAAAATTTGCAT 13314 >seq3660 Length=14069 Score = 89.7 bits (98), Expect = 4e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 |||||| || || | || |||| ||||| || || |||||||| |||||||||||| | Sbjct 2518 CCCTCCACGGAGACGGAGGACCAAATGCAATGTCGATTCCTTTTGAATGTTGTAGTCGCC 2459 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTC 16821 || ||| || | || |||||||||||||| ||| |||| | || ||||| || Sbjct 2458 CAATGTTCTGCCATCTTCCAATTGTTTGCCAGCAAAAATCAAGCGTTGTTGATC 2405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404689301883430