Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq71022 551 7e-152 seq1270 212 8e-50 >seq71022 Length=3779 Score = 551 bits (610), Expect = 7e-152 Identities = 1263/1888 (67%), Gaps = 29/1888 (2%) Strand=Plus/Plus Query 61832 ATTTTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAG 61891 ||||| || || || | || |||||||||| | || ||||| || || | ||| Sbjct 763 ATTTTGTC-TTATCGACGGTAAATTGAATGGCATTAACGGCTGGTTTTGTTCGCAAATAA 821 Query 61892 TACATTCCCGTTTTTAGACCGAGACT-CCATCCGTAAAAATGCATACTCGTTAGTTTGGA 61950 |||||||| ||||||| ||| ||| | ||| ||| |||| || || |||||||| Sbjct 822 TACATTCCAGTTTTTAAACC-AGATTTCCAGCCGAAAAAGTGAATTGAGGTTAGTTTTCC 880 Query 61951 ATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCT 62010 |||| | || || || | ||| || || | || || ||||||||||| ||||| | Sbjct 881 ATAATTGGGCTCGGCGACATGAATGTTGAATGACTGGGACTGATCGATGAATGCTCCTCG 940 Query 62011 GTCTGCAGCCATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTC 62069 ||||||||||||||||| | || | || |||||||| ||||| || || || Sbjct 941 ATCTGCAGCCATTTTTATGGCCACTTTGACCGAAACTTCCCAAACGGTTTTGTACAATTC 1000 Query 62070 GCTTAATATCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCCATAATCC 62126 | ||| || ||||| | | |||| |||||||| || || |||| ||| Sbjct 1001 ACG-AATGTCAAATGGAATTTCTTCAATATTTTGAATGGAACCGTTATTGGCCAAAATTT 1059 Query 62127 TATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGAT 62186 |||| || || ||||| | |||||| | | || |||||| || |||| | ||| ||| Sbjct 1060 TATTTTTCATATCATCGTCCCATAAATCGCGTTCAGTTAAATCTTTAAGCAAATGATGAT 1119 Query 62187 TAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTT 62246 | || || || ||||| || || | || | ||| |||| | || || || |||| Sbjct 1120 TGACAACCTGGAATTCACCCGATAGGACACGTCGATTGTAGACGTTTGATGTGTAAGGTT 1179 Query 62247 CCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCA 62306 | | || ||||| ||||| | |||||| ||||| || || || ||||| ||||||| | Sbjct 1180 CAAATGATTCATTGTTTCCGAGAATTTGTGCAGTCGAAGCGGTTGGCATTGGTGCCAAAA 1239 Query 62307 ATAAACTATTTCTAAGACCGTATGTTCTG---ATTTTATCTTTTAGAGGTTCCCAATTCC 62363 || |||||| | ||| |||| || ||||| | || | |||||||||| Sbjct 1240 GTAGGGAATTTCTGATACC---TGTTTTGGCAATTTTCTGCTTCAATTCATCCCAATTCC 1296 Query 62364 AAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACG 62423 | | ||| | ||| || | ||| || ||||| | Sbjct 1297 ATAAATCTGTTGGTTTTTTGTCCCACATGTCATACTGCAAAATGCCTTTACTAACTGGGC 1356 Query 62424 ATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATG 62483 | ||| |||| || || || | ||||| | || || | |||| ||| || || || | Sbjct 1357 AGCCTTCATAAGTCTCATAGGTGCCTTCAATTTCGGCCAATTCAGTACTAGCTTCCAAGG 1416 Query 62484 CACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATC-TTGCGCTTCCAGGCTATCA 62542 |||| |||||||| || ||||| || || || || || ||| ||||| ||| || Sbjct 1417 CACCATAATAAATCGTCTCGAAAAT-TTGTTGGTTCAATAATTGGGCTTCTTCGCTCTCG 1475 Query 62543 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGT 62602 | || ||| | || ||||| || || || | || ||||| ||||| || || || Sbjct 1476 TAAGGGTAACGCATTAGGATAAATGCATCAGCCATGCCCTGAACGCCAATTCCAATGGGA 1535 Query 62603 CTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATT 62662 | ||||||| |||| || || ||||||||| || |||||| | || | ||| || ||| Sbjct 1536 CGATGTCTCATATTCGATGTTCTAGCTTCTGGGATCGGATAAAAGTTGACATCAATGATT 1595 Query 62663 TTATTGAGATTTCTGACAATTAC---TTTGACCACATCCTTCAGTTTGAGAAAATCAAA- 62718 ||||| | |||| | |||| ||| || || |||| ||| |||||||| Sbjct 1596 TTATTCAAATTTTTCG---TTACGGTTTTTGTGACTTCTTTCAATTTCTTGAAATCAAAC 1652 Query 62719 --TCGCCCATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACC 62776 | ||| | |||||||| ||||| |||| || |||| |||||| ||||| || Sbjct 1653 GTTTTTTCATTAGTAACAAACATATTCAAGGCAATTGAGGCCAAATTACAGACGGCAACT 1712 Query 62777 TCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCT 62836 |||| | | ||||| | ||||| || || | || || || || |||||||| Sbjct 1713 TCATCTTTACTTGAATATTCGACAATCTCTGTACACAAGTTGCTGCATTTAATGGTTCCA 1772 Query 62837 AAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCA 62896 | ||||||||| ||| ||| ||||||| || || || || || || | || ||||| Sbjct 1773 ATATTTTGTTGGTTAGATTTTCTGTTACAAGCGTCTTTGTAGAGCATATAAGGCGTACCC 1832 Query 62897 GTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTAT-TATAGATTT 62955 ||||||| |||||||| ||||| || ||||| | | | ||||| || | || | Sbjct 1833 GTTTCAACTTGAGATTCAATAATGGCAAACCAGAGGTCCTGTGCCTTAATCTGGCGAATA 1892 Query 62956 GTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATT 63015 | | || || |||| ||| |||| |||||| ||| ||||| || ||||| | Sbjct 1893 AAACGACCTT-CTTTTTCATATTGTGTGTACAATTTTTCAAACTCCTCACCCCATGTGTC 1951 Query 63016 GTCCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCG 63075 || || ||||| || |||| || |||||||| |||| | | | | || || | Sbjct 1952 GTGTAGACCAGGGCACTCATGAGGGCACATCAAACTCCACATTTCATTAGACTCGACCCT 2011 Query 63076 TTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTC 63135 || |||||| | ||| || |||||||| || | ||||| ||| | | || ||| || Sbjct 2012 TTGCATAAACAAATCTGGGATCCAAAGGGCGAAAAATAAATCACGAGCCCTTCCTTCTTC 2071 Query 63136 GTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAA 63195 || || ||||| || || | || |||||| | | || || ||||| ||||| | Sbjct 2072 CTTGCCCGTATTTTTCTTCAAGTCTAGGAACTCGAAAACGTCCCCGTGCCAAGGTTCAAG 2131 Query 63196 GTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTT 63255 || ||||| | | | ||||| | || || || ||||| || | ||| | ||| || || Sbjct 2132 ATAAATGGCAAAAGCGCCAGGTCTCTTATTACCACCCTGGTCCACGTAACGAGCCGTATT 2191 Query 63256 ATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATA 63315 || || |||| ||||||||| | | ||||| || | || || || || | |||||| Sbjct 2192 GTTGTACACTCGCAACATTGGTACTAGGCCATTTGAAATGCCGTTAGTACCGGCGATATA 2251 Query 63316 GCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGAT 63375 |||| |||| |||||| || ||| || ||||| ||||| |||||| | Sbjct 2252 AGTTCCCTTGGCCCGAATACAGTGAACATTTAGGCCAATTCCGCCTGCAGATTTAGATAC 2311 Query 63376 TAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCAT-GTTAA 63434 || || || | || || ||||| || |||||||| ||||||||||| |||| || || Sbjct 2312 TAGCGCACACTGCTTCAAGGTATCGTAAATGCCCTCAATACTATCATCACTCATCGTCAA 2371 Query 63435 GTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAG 63494 |||| || | |||| || ||||| || |||| ||| || ||||| || | Sbjct 2372 TAAGAAGCAAGAT-GACAACTGAGGACGAGGGGTGGCCGCTGCAAACAATGTAGGCGACG 2430 Query 63495 CGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCC 63554 | ||||| || | |||||| | || || ||||||||||| || ||||| || ||| Sbjct 2431 CATGAGTGAAATAACGTTCAGACAACAGGTTATACGTCTCAATGGCAGAGTCAATGTCCT 2490 Query 63555 ATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGT 63614 |||||| ||||| || || | ||| ||||| ||||| || | || || | || Sbjct 2491 CCCCATGAATGCCTACAGCTACTCTCATCAACATATGCTGTGGACGCTCCACAACTTTCC 2550 Query 63615 TGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAA 63674 || || |||||||| || ||| |||||| ||||| || || ||||| ||||| || Sbjct 2551 CCTTAATCTTCAACAAATAAGATCGTTCCAAGGTTTTGAAGCCGAAATAATTGTAGCCAA 2610 Query 63675 AGTCTCGTTCGTAAATAATAACCGAGTT 63702 | || || |||||||| || |||| || Sbjct 2611 AATCACGATCGTAAATGATGGCCGAATT 2638 >seq1270 Length=21014 Score = 212 bits (234), Expect = 8e-50 Identities = 375/542 (69%), Gaps = 5/542 (1%) Strand=Plus/Minus Query 32370 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 32429 || || ||||| || || |||||||| ||||| || || ||||||| ||| ||| | Sbjct 10759 TTCTGATATTCGCCGACTTTCTTTTCGAAGAAATTCGTCTTGCCTTCTAGTGAAATAGAT 10700 Query 32430 TCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAATTC-AGAAAT 32488 |||||||||| ||||||||| || || |||||| | | ||||||||| | ||| Sbjct 10699 TCCATGAAATTGAATGGATTTTTAGTGTTGTAAATTCGTCCGACTCCCAATTCTATCAAT 10640 Query 32489 CAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 32548 | ||| || || || ||||| |||||| | ||| | || |||||||| || | | Sbjct 10639 -AGTCTGTCAGCAACGAATTCAATATATTCTGACATAAGTTTGCAATTCATGCCAAGCAT 10581 Query 32549 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 32608 | |||||| | || | || | ||||| |||||||| || || || ||||| Sbjct 10580 ATCAACTGGTAAGGCATCTGTTAAGAATTCCTGTTCAATTTCAACAGCTTCACGGATAAT 10521 Query 32609 AGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAA 32668 | | | |||||| | ||| | | ||| | ||||| | || || || Sbjct 10520 TTCGATGATTCTTTCTTTTGTTGGTTTCTGGACTAAGTAACGGAACATAAGGCAGGCAAA 10461 Query 32669 ATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCAT 32728 |||||||||| || || || | | ||| | |||||| || || || || || ||||| Sbjct 10460 GTCGCAGTGTAATCCTTCATCACGAGAAATGAGTTCGTTTGAGAATGTCAGACCAGGCAT 10401 Query 32729 TAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTC 32788 |||||||| || |||||||| || ||||| ||||| ||| |||||||||||||| Sbjct 10400 AAGGCCACGTTTCTTAAGCCAGAAAATGGAAGCAAAACTTCCGCTGAAGAAAATTCCTTC 10341 Query 32789 TACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCA-TG--TATCCACTT 32845 || || ||||| || |||| | ||||| ||| |||| | | | || |||||| | Sbjct 10340 GACGGCAGCAAATGCTATAATGCGTTCTCCGTAATTGGCGTTCTGACTGCATATCCATTG 10281 Query 32846 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATA 32905 ||||||||||||||||||||| ||||| || | ||||| | ||||| || |||| Sbjct 10280 AATAGCCCAATCGGCCTTCTTTTTGACACATGGAAGGGTCTCAACTGCATTGAATAGATG 10221 Query 32906 GT 32907 || Sbjct 10220 GT 10219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632992372257200