Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq36344 127 2e-24 seq3660 127 2e-24 seq144 127 2e-24 seq25532 100 2e-16 seq31860 91.5 1e-13 seq7849 86.0 5e-12 >seq36344 Length=11671 Score = 127 bits (140), Expect = 2e-24 Identities = 159/215 (74%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||||||||| || ||||||||||| || ||| | || ||| | ||||| || |||| Sbjct 676 ATGCAAATATTCGTCAAGACTTTGACTGGAAAAACTATTACATTGGAAGTCGAACCGTCA 735 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| || ||| | || |||| |||| ||| ||||||||||| || || || ||| Sbjct 736 GACACAATTGAG--AATGTAAAAGCTAAAATTCAA-GACAAAGAAGGAATCCCCCCAGAC 792 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 ||||| || | |||||||| ||||| ||| | ||||| | || || || ||| ||| Sbjct 793 CAACAACGTTTGATTTTTGCTGGCAAGCAACTCGAAGACGGACGTACCTTGTCCGACTAC 852 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || ||||| || | ||||| || || Sbjct 853 AACATCCAGAAGGAATCAACATTGCATTTGGTCCT 887 Score = 111 bits (122), Expect = 1e-19 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 25092 GACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAA 25151 || || ||||| |||||||| || |||||||| | ||||| ||||| |||||||||||| Sbjct 541 GATAAGGAAGGTATTCCACCAGATCAACAGCGTTTGATTTTCGCCGGAAAACAATTAGAA 600 Query 25152 GATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||| || ||| || || |||||||||||||||||||| ||||| || || || || Sbjct 601 GATGGCCGTACTTTGTCTGACTACAATATTCAAAAAGAATCTACGCTTCACTTGGTCCT 659 >seq3660 Length=14069 Score = 127 bits (140), Expect = 2e-24 Identities = 159/216 (74%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||||||||| || || | |||||| | ||||| || | || Sbjct 2291 ATGCAAATCTTCGTCAAGACTTTGACTGGAAAGACAATCACATTGGAAGTTGAAGCTTCG 2350 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || ||||| || |||| | || || | ||| || || ||||| || ||||| || Sbjct 2351 GATACTATTGAAAATGTCA---AGGCTAAGATTCAA-GAGAAGGAAGGAATCCCACCAGA 2406 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||||| || | |||||||| ||||||||||| ||||||| | || ||||||| || Sbjct 2407 TCAACAACGCTTGATTTTTGCTGGCAAACAATTGGAAGATGGCAGAACATTGGGCGACTA 2466 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| |||||||| ||||| || | ||||| || || Sbjct 2467 CAACATTCAAAAGGAATCGACATTGCATTTGGTCCT 2502 >seq144 Length=14776 Score = 127 bits (140), Expect = 2e-24 Identities = 159/215 (74%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || || || || || ||| ||||||| | ||||| ||| | || Sbjct 14226 ATGCAAATCTTCGTGAAAACCTTAACTGGCAAAACCATCACCTTGGAAGTCGAGCCCTCG 14285 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| ||||| | || |||| |||| ||| || || ||||| || || || || Sbjct 14286 GACACAATCGAA--AATGTTAAAGCTAAAATTCAA-GATAAGGAAGGTATCCCTCCAGAT 14342 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 |||||||| | |||||||||||||||||||||||||||| || || || || ||| Sbjct 14343 CAACAGCGTTTGATTTTTGCCGGCAAACAATTAGAAGATGGCCGTACATTGTCAGACTAC 14402 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| ||||| || || || | ||||| || || Sbjct 14403 AATATCCAAAAGGAGTCGACATTGCATTTGGTACT 14437 Score = 125 bits (138), Expect = 6e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| || || |||||||||||| |||| || | ||||| || |||| Sbjct 10547 ATGCAAATCTTTGTCAAAACATTGACCGGTAAAACCATAACTTTAGAAGTTGAAGGGTCT 10606 Query 25059 GACACTATCGAGTC-ACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || | || || | | || | || | ||| || || ||||| || ||||| || || Sbjct 10607 GATTCCATTGAAAATATTAAAACCAAGATTCAA-GATAAGGAAGGAATCCCACCAGATCA 10665 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | ||||| || || || ||||| ||||||| | || | ||||||||| Sbjct 10666 ACAACGCCTCATTTTCGCTGGAAAGCAATTGGAAGATGGACATACCCTATCCGATTACAA 10725 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||||||||||||| |||||||| || || ||| | | ||||| || Sbjct 10726 TATTCAAAAAGAATCGACGCTACACTTGGTCCTACGCTTGAGAGGTGG 10773 Score = 125 bits (138), Expect = 6e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| ||||| || ||| ||||||| | ||||| ||| | || Sbjct 13770 ATGCAAATCTTCGTCAAGACATTGACTGGCAAAACCATCACCTTGGAAGTCGAGCCCTCG 13829 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || |||||| | ||| || ||| || || ||||| || ||||| || ||| Sbjct 13830 GATACCATCGAGAACGTTAAGGCCAAGATCCAGGATAAGGAAGGTATCCCACCAGATCAA 13889 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | ||||| || || |||||||||||||||| || ||| || || |||||| Sbjct 13890 CAGCGTTTGATTTTCGCAGGAAAACAATTAGAAGATGGCCGTACTTTGTCTGACTACAAT 13949 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || ||||| || || || | ||||| || || Sbjct 13950 ATCCAAAAGGAGTCGACATTGCATTTGGTACT 13981 Score = 125 bits (138), Expect = 6e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || |||||||| || ||| | ||||| | ||||| ||| | || Sbjct 14454 ATGCAGATTTTCGTTAAAACTTTGACTGGCAAAACTATCACCTTGGAAGTTGAGCCCTCA 14513 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || || || | ||| || ||| ||||||||||| ||||| || || || Sbjct 14514 GATACCATTGAAAACGTTAAGGCCAAGATCCAGGACAAAGAAGGTATTCCTCCAGATCAG 14573 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | ||||| ||||| |||||||| ||||||| |||||| || ||| |||||| Sbjct 14574 CAGCGTTTGATTTTCGCCGGTAAACAATTGGAAGATGGCCGCACTTTGTCCGACTACAAT 14633 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||||| || || || | ||||| || || Sbjct 14634 ATTCAAAAGGAGTCGACATTGCATTTGGTCCT 14665 Score = 118 bits (130), Expect = 9e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| ||||| || ||||| ||||| ||||| ||||||| | || || ||| | || Sbjct 12745 AATGCAGATATTCGTCAAGACATTGACTGGTAAGACCATCACTTTGGAGGTCGAGCCATC 12804 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||| || |||||| | ||| || ||| || || ||||| |||||||| ||||| Sbjct 12805 TGATACGATCGAGAACGTAAAGGCTAAGATCCAGGATAAGGAAGGTATTCCACCAGACCA 12864 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || ||||| || || || || ||||| | || || || ||| ||||| Sbjct 12865 GCAGCGTTTGATCTTTGCTGGAAAGCAGTTGGAAGACGGACGTACCTTGTCCGACTACAA 12924 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||| ||||| || || | ||||| || || Sbjct 12925 TATTCAGAAAGAGTCTACATTGCATTTGGTTCT 12957 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || || || ||||| ||| | |||||| | ||||| || | || Sbjct 13314 ATGCAAATTTTCGTCAAAACCTTAACCGGAAAAACGATCACATTGGAAGTCGAACCTTCG 13373 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || ||||| || |||| || ||| ||||||||||| ||||| || || || Sbjct 13374 GATACTATTGAAAACGTGAAAGCTAAGATCCAAGACAAAGAAGGTATTCCTCCAGATCAG 13433 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | ||||| || || |||||||| ||||||| || ||| || || ||||| Sbjct 13434 CAGCGTTTGATTTTCGCTGGAAAACAATTGGAAGATGGACGTACTTTGTCTGACTACAAC 13493 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| ||||| || || | ||||| || || Sbjct 13494 ATTCAGAAAGAGTCTACTTTGCATTTGGTCCT 13525 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || || ||||| || ||| ||||||| | ||||| ||| | || Sbjct 13542 ATGCAGATTTTTGTTAAAACATTGACAGGAAAAACCATCACTTTGGAAGTCGAGCCCTCG 13601 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || ||||| || | ||| || ||| ||||||||||| ||||| || || ||| Sbjct 13602 GATACTATTGAAAACGTTAAGGCCAAGATCCAAGACAAAGAAGGTATTCCTCCAGATCAA 13661 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | ||||| || || || ||||| ||||||| || || || || ||||| Sbjct 13662 CAACGTCTCATTTTCGCTGGAAAGCAATTGGAAGATGGACGTACCTTGTCAGACTACAAC 13721 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||||| || || || | ||||| || || Sbjct 13722 ATTCAAAAGGAGTCGACATTGCATTTGGTCCT 13753 Score = 91.5 bits (100), Expect = 1e-13 Identities = 138/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| || || |||||||||||| |||| || | ||||| || ||| Sbjct 7702 ATGCAAATCTTTGTCAAAACATTGACCGGTAAAACCATAACCTTAGAAGTTGAAGGTTCT 7643 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || | || ||| | ||| | || | ||| || || ||||| ||||| || || || Sbjct 7642 GATTCCATTGAGAATGTTAAGGCCAAGATTCAA-GATAAGGAAGGAATTCCTCCAGATCA 7584 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | ||||| || || || ||||| ||||| | || || | || ||||| Sbjct 7583 ACAACGCCTCATTTTCGCTGGAAAGCAATTGGAAGACGGACGTACCCTATCTGACTACAA 7524 Query 25178 TATTCAAAAAGAAT 25191 ||||||||||||| Sbjct 7523 CATTCAAAAAGAAT 7510 >seq25532 Length=5913 Score = 100 bits (110), Expect = 2e-16 Identities = 155/219 (71%), Gaps = 8/219 (4%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || || ||||| || || | || || | ||||| ||| | | Sbjct 1144 ATGCAAATTTTCGTTAAAACATTGACAGGAAAGACAATAACGCTTGAAGTTGAGGCAGCC 1085 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| || || |||| | | |||| ||| || |||||||| || ||||| || Sbjct 1084 GACACGATTGAAAGTGTCA---AGGGTAAAATTCAG-GATAAAGAAGGCATCCCACCAGA 1029 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||||| | | |||||||| ||||||||||| ||||| | | | || |||| ||||| Sbjct 1028 TCAACAAAGATTGATTTTTGCTGGCAAACAATTGGAAGACGCTAGGACATTGGGTGATTA 969 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAG 25213 |||||| || ||||| || || | || || || || || Sbjct 968 CAATATCCAGAAAGAGTCTACATTGCACTTGGTTCTCAG 930 >seq31860 Length=14314 Score = 91.5 bits (100), Expect = 1e-13 Identities = 153/219 (70%), Gaps = 8/219 (4%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||||||||| | || || | ||||| ||| | || ||| | |||| ||| || Sbjct 1062 ATGCAAATATTCATTAAAACCCTAACCGGAAAAACAATAACACTTGAAGCTGAGGGCTCA 1121 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || |||| || |||| || || | ||| || |||||||| || ||||| || Sbjct 1122 GATTCTATTGAAAATGTCA---AATTGAAGATTCAG-GATAAAGAAGGCATCCCACCAGA 1177 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 || || | | |||||||| ||||||||||| ||||||| || | |||| || Sbjct 1178 TCAGCAAAGATTGATTTTTGCTGGCAAACAATTGGAAGATGGCAAAACACTTAGCGACTA 1237 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAG 25213 ||| ||||||||||| ||||| | ||||| || ||||| Sbjct 1238 CAACATTCAAAAAGAGTCCACATTGCATTTGGTCCTAAG 1276 >seq7849 Length=1912 Score = 86.0 bits (94), Expect = 5e-12 Identities = 156/226 (69%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 51076 ATTGACCACATACAACCCACATAATTGTTAGGATCGCGACCATCCACGCTGTAATGATCG 51135 || |||||||| ||||| ||||| |||||| || | ||||| | |||||| |||| Sbjct 1803 ATAGACCACATGCAACCGACATATCCGTTAGGGTCTCTTCCATCAAGACTGTAACGATCA 1744 Query 51136 TTTAGAAATATGGCATAACCCAATGCCATGTCTGCACTAGGCGTCCATTCCATAATTTTC 51195 |||| | |||| || || | | ||| |||| | ||||| || | || ||| Sbjct 1743 TTTATATATATTGCGTACTCTAGTGCTTGTTCTGGTGTTTCTGTCCACTCTAATATCTTC 1684 Query 51196 TTGGCCCAGTACATGCGCATGTAACCGTGCATCTTGCCCTCGCAACGAAGCTGCGCTTGA 51255 |||||||||||||| || | | |||||||| || || || | | ||||| || Sbjct 1683 TTGGCCCAGTACATACGTAAAAAGCCGTGCATTTTTCCTTCTCGAACTAGCTGTATCTGT 1624 Query 51256 GCCGAGTTCCACAATTCGTCGTGAGT-TTGGCAACTTGCCAGCTCT 51300 || || ||||| || ||||| || || || | | |||| |||||| Sbjct 1623 GCTGAATTCCATAAATCGTCATGGGTCTTTGAATCTTG-TAGCTCT 1579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 432901507342955