Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq1270 217 2e-51 seq56035 96.9 4e-15 seq46033 96.9 4e-15 seq44910 96.9 4e-15 seq30198 96.9 4e-15 >seq1270 Length=21014 Score = 217 bits (240), Expect = 2e-51 Identities = 383/556 (69%), Gaps = 8/556 (1%) Strand=Plus/Minus Query 92794 ACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAA 92853 || ||| | || || ||||| || ||||| ||||| |||||||| ||||| ||||| | Sbjct 10768 ACGCCAAACTTCTGATATTCGCCGACTTTCTTTTCGAAGAAATTCGTCTTGCCTTCTAGT 10709 Query 92854 GATATCGAATTCACTAG--TGATTGGATTCTTGGCGTTATAATACTTTTCACCGAT---C 92908 || || || | || | ||| |||||| || | ||| ||| || |||| | Sbjct 10708 GAAATAGATTCCATGAAATTGAATGGATTTTTAGTGTTGTAAA---TTCGTCCGACTCCC 10652 Query 92909 AACTCGTACAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTC 92968 || || ||||| ||| ||||| || ||||| || || | ||||| | | |||||| Sbjct 10651 AATTCTATCAATAGTCTGTCAGCAACGAATTCAATATATTCTGACATAAGTTTGCAATTC 10592 Query 92969 ATTCCTAGAAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCT 93028 || || || | | || |||| || || || ||||| || | || ||| |||| ||| Sbjct 10591 ATGCCAAGCATATCAACTGGTAAGGCATCTGTTAAGAATTCCTGTTCAATTTCAACAGCT 10532 Query 93029 TCTTTCAAGATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATT 93088 || | ||||| || | ||| |||| |||||| || || | ||| | |||| Sbjct 10531 TCACGGATAATTTCGATGATTCTTTCTTTTGTTGGTTTCTGGACTAAGTAACGGAACATA 10472 Query 93089 AAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTT 93148 | ||| ||||||||| ||||| ||||| || || || || | || || |||||| Sbjct 10471 AGGCAGGCAAAGTCGCAGTGTAATCCTTCATCACGAGAAATGAGTTCGTTTGAGAATGTC 10412 Query 93149 AAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaa 93208 | ||| || | || || |||||||| ||||| || || ||||||||||| || || Sbjct 10411 AGACCAGGCATAAGGCCACGTTTCTTAAGCCAGAAAATGGAAGCAAAACTTCCGCTGAAG 10352 Query 93209 aaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTG 93268 || || ||||| ||||| |||||||| | ||| ||||| | |||| ||| | |||| Sbjct 10351 AAAATTCCTTCGACGGCAGCAAATGCTATAATGCGTTCTCCGTAATTGGCGTTCTGACTG 10292 Query 93269 CTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCG 93328 | ||||||| | |||||||||||| || || || | ||| || || || || | || Sbjct 10291 CATATCCATTGAATAGCCCAATCGGCCTTCTTTTTGACACATGGAAGGGTCTCAACTGCA 10232 Query 93329 TTAAATAGGTAATCTC 93344 || ||||| | |||| Sbjct 10231 TTGAATAGATGGTCTC 10216 Score = 105 bits (116), Expect = 7e-18 Identities = 79/93 (85%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 93355 ATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGC 93414 ||||| || ||||| ||||||| || | |||||||| ||||| |||||||||||||| Sbjct 7473 ATCTCTTACATATGTGTCGATTAGCAAACTGTACATTTCTGAATGCACATTCTCCATTGC 7414 Query 93415 AATTTGGAATCCGTAGAAACATCTAGCTTCCGT 93447 |||||||||||| ||||||||||| ||||| || Sbjct 7413 AATTTGGAATCCATAGAAACATCTTGCTTCAGT 7381 >seq56035 Length=3103 Score = 96.9 bits (106), Expect = 4e-15 Identities = 74/85 (87%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGT-TCCCTCGGGA-GC 126322 ||||||| |||||||| |||||||||||||||||||||| |||||| ||| ||| || Sbjct 1301 AGTCAGGATGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTCTCCGAAAGGAGGC 1242 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 ||||||||||||||||| |||||| Sbjct 1241 GTGGGTTCGAACCCCACTTCTGACA 1217 Score = 96.9 bits (106), Expect = 4e-15 Identities = 74/85 (87%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGT-TCCCTCGGGA-GC 126322 ||||||| |||||||| |||||||||||||||||||||| |||||| ||| ||| || Sbjct 1749 AGTCAGGATGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTCTCCGAAAGGAGGC 1808 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 ||||||||||||||||| |||||| Sbjct 1809 GTGGGTTCGAACCCCACTTCTGACA 1833 Score = 89.7 bits (98), Expect = 6e-13 Identities = 67/76 (88%), Gaps = 2/76 (3%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGT-TCCCTCGGGA-GC 126322 ||||||| |||||||| |||||||||||||||||||||| |||||| ||| ||| || Sbjct 1382 AGTCAGGATGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTCTCCGAAAGGAGGC 1323 Query 126323 GTGGGTTCGAACCCCA 126338 |||||||||||||||| Sbjct 1322 GTGGGTTCGAACCCCA 1307 >seq46033 Length=2706 Score = 96.9 bits (106), Expect = 4e-15 Identities = 74/85 (87%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGT-TCCCTCGGGA-GC 126322 ||||||| |||||||| |||||||||||||||||||||| |||||| ||| ||| || Sbjct 2362 AGTCAGGATGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTCTCCGAAAGGAGGC 2421 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 ||||||||||||||||| |||||| Sbjct 2422 GTGGGTTCGAACCCCACTTCTGACA 2446 >seq44910 Length=2576 Score = 96.9 bits (106), Expect = 4e-15 Identities = 74/85 (87%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGT-TCCCTCGGGA-GC 126322 ||||||| |||||||| |||||||||||||||||||||| |||||| ||| ||| || Sbjct 1316 AGTCAGGATGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTCTCCGAAAGGAGGC 1257 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 ||||||||||||||||| |||||| Sbjct 1256 GTGGGTTCGAACCCCACTTCTGACA 1232 >seq30198 Length=2529 Score = 96.9 bits (106), Expect = 4e-15 Identities = 74/85 (87%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGT-TCCCTCGGGA-GC 126322 ||||||| |||||||| |||||||||||||||||||||| |||||| ||| ||| || Sbjct 278 AGTCAGGATGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTCTCCGAAAGGAGGC 337 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 ||||||||||||||||| |||||| Sbjct 338 GTGGGTTCGAACCCCACTTCTGACA 362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556298669904680