Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq144 156 8e-33 seq36344 140 6e-28 seq3660 140 6e-28 seq31860 111 3e-19 >seq144 Length=14776 Score = 156 bits (172), Expect = 8e-33 Identities = 173/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| ||||| || | ||||| || | || |||||||| || || || || ||||| Sbjct 12972 CCTCCACGAAGACGGAGAACCAAATGCAATGTAGACTCTTTCTGAATATTGTAGTCGGAC 12913 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | || ||||| |||||||| || || || || | | || ||||| |||||| Sbjct 12912 AAGGTACGTCCGTCTTCCAACTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCTGGTGGA 12853 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || |||||||| || || ||||| ||||| ||| |||||| || || | || || || Sbjct 12852 ATACCTTCCTTATCCTGGATCTTAGCCTTTACGTTCTCGATCGTATCAGATGGCTCGACC 12793 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 ||||| |||||||| || || || | ||||||||||||||||||||| || Sbjct 12792 TCCAAAGTGATGGTCTTACCAGTCAATGTCTTGACGAATATCTGCATTCTG 12742 Score = 152 bits (168), Expect = 9e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||||| || | || ||||| |||||||| || || || || Sbjct 13996 CCACCACGGAGACGGAGTACCAAATGCAATGTCGACTCCTTTTGGATATTGTAGTCAGAC 13937 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | ||||||||||| || || || ||||| || | | ||||| || ||||| Sbjct 13936 AAAGTACGGCCATCTTCTAATTGTTTTCCTGCGAAAATCAAACGCTGTTGATCTGGTGGG 13877 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || |||||||| || || ||||| ||||| ||| ||||||||| || | | || ||| Sbjct 13876 ATACCTTCCTTATCCTGGATCTTGGCCTTAACGTTCTCGATGGTATCCGAGGGCTCGACT 13817 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||||||||||||||| || || | ||||||||||| || ||||| Sbjct 13816 TCCAAGGTGATGGTTTTGCCAGTCAATGTCTTGACGAAGATTTGCAT 13770 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||||| || | || |||||||||||||| || || || || Sbjct 14224 CCACCACGGAGACGGAGTACCAAATGCAATGTCGACTCTTTTTGGATATTGTAGTCAGAC 14165 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | ||| | |||||||| || ||||| || ||||| || | | ||||| || || || Sbjct 14164 AATGTGCGGCCATCTTCCAATTGCTTTCCAGCGAAAATCAAACGCTGTTGATCTGGAGGG 14105 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||||||||| |||||||| || ||||| || || ||||| || | | || ||| Sbjct 14104 ATGCCTTCCTTATCTTGAATTTTAGCCTTTACATTTTCAATGGTATCCGAGGGCTCGACT 14045 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||||||||||||||| || || | ||| || ||||| || ||||| Sbjct 14044 TCCAAGGTGATGGTTTTGCCAGTTAAGGTTTTCACGAAGATTTGCAT 13998 Score = 143 bits (158), Expect = 5e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | ||||| || | || ||||| ||||| ||||| || || || Sbjct 13768 CCACCACGGAGACGGAGGACCAAATGCAATGTCGACTCCTTTTGAATGTTGTAGTCTGAC 13709 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | |||||||| || ||||| || ||||| ||||| | |||||| || || ||| Sbjct 13708 AAGGTACGTCCATCTTCCAATTGCTTTCCAGCGAAAATGAGACGTTGTTGATCTGGAGGA 13649 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||| |||||||| ||||| ||||| ||| || || || || | | || ||| Sbjct 13648 ATACCTTCTTTGTCTTGGATCTTGGCCTTAACGTTTTCAATAGTATCCGAGGGCTCGACT 13589 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| |||||||||||||| || | || || || || |||||||| Sbjct 13588 TCCAAAGTGATGGTTTTTCCTGTCAATGTTTTAACAAAAATCTGCAT 13542 Score = 140 bits (154), Expect = 6e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||||| || | || ||||| |||||||| || || || || Sbjct 14452 CCACCACGGAGACGGAGTACCAAATGCAATGTCGACTCCTTTTGGATATTGTAGTCTGAC 14393 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | ||| | ||||||||||| || || ||||| || || | | ||||| || || || Sbjct 14392 AATGTACGGCCATCTTCTAATTGTTTGCCGGCAAAAATCAAACGCTGTTGATCTGGAGGG 14333 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || |||||||| |||||||| || || || || ||||| ||||| | | || ||| Sbjct 14332 ATACCTTCCTTATCTTGAATTTTAGCTTTAACATTTTCGATTGTGTCCGAGGGCTCGACT 14273 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||||||||||||||| || || | ||| || ||||| || ||||| Sbjct 14272 TCCAAGGTGATGGTTTTGCCAGTTAAGGTTTTCACGAAGATTTGCAT 14226 Score = 138 bits (152), Expect = 2e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||||||||||||| || |||||||| || || |||||||| || || |||||||| Sbjct 10755 ACCAAGTGTAGCGTCGATTCTTTTTGAATATTGTAATCGGATAGGGTATGTCCATCTTCC 10696 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 || ||||| || ||||| ||||| | |||||| || ||||| || |||||||| |||||| Sbjct 10695 AATTGCTTTCCAGCGAAAATGAGGCGTTGTTGATCTGGTGGGATTCCTTCCTTATCTTGA 10636 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||| | || | || |||| || | ||| ||||| || || |||||||| Sbjct 10635 ATCTTGGTTTTAATATTTTCAATGGAATCAGACCCTTCAACTTCTAAAGTTATGGTTTTA 10576 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || | || ||||| || || ||||| Sbjct 10575 CCGGTCAATGTTTTGACAAAGATTTGCAT 10547 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | ||||| || | || |||||||| || ||||||||||| || Sbjct 13200 CCACCACGGAGACGGAGGACCAAATGCAATGTCGACTCTTTCTGAATGTTATAATCTGAC 13141 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| || || || || || || || | | ||| || || || || Sbjct 13140 AGGGTACGTCCATCTTCCAATTGTTTTCCAGCAAAGATCAAACGTTGCTGATCTGGGGGG 13081 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || |||||||| ||||||||||| || || ||| || |||||||| | | || || Sbjct 13080 ATACCTTCCTTATCTTGAATCTTGGCTTTAACGTTTTCAATGGTGTCGGAAGGCTCAACC 13021 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || ||||| ||||| || | ||||||||||| || ||||| Sbjct 13020 TCCAATGTAATGGTCTTTCCAGTCAACGTCTTGACGAAAATTTGCAT 12974 Score = 132 bits (146), Expect = 9e-26 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 68271 TCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAAT 68330 |||||||| ||||| || || || || || | || ||||| || ||||| || ||||| Sbjct 7512 TCTTTTTGAATGTTGTAGTCAGATAGGGTACGTCCGTCTTCCAATTGCTTTCCAGCGAAA 7571 Query 68331 ATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCC 68390 ||||| | |||||| || || ||||| |||||||| ||||||||||| ||||| || | Sbjct 7572 ATGAGGCGTTGTTGATCTGGAGGAATTCCTTCCTTATCTTGAATCTTGGCCTTAACATTC 7631 Query 68391 TCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACG 68450 || |||| || | ||| ||||| ||||| |||||||| || || | || ||||| Sbjct 7632 TCAATGGAATCAGAACCTTCAACTTCTAAGGTTATGGTTTTACCGGTCAATGTTTTGACA 7691 Query 68451 AATATCTGCAT 68461 || || ||||| Sbjct 7692 AAGATTTGCAT 7702 Score = 131 bits (144), Expect = 3e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | ||||| || | || ||||| ||||| || || || ||||| Sbjct 14680 CCACCACGGAGACGGAGGACCAAATGCAATGTCGACTCCTTTTGAATATTGTAGTCGGAC 14621 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | |||||||| || || || |||||||| || | | || || || || ||| Sbjct 14620 AAAGTGCGGCCATCTTCCAATTGTTTACCGGCGAAAATCAAACGCTGCTGATCTGGAGGA 14561 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||| ||||| || ||||| ||||| ||| || ||||| |||| | || ||| Sbjct 14560 ATACCTTCTTTGTCCTGGATCTTGGCCTTAACGTTTTCAATGGTATCTGAGGGCTCAACT 14501 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||||||||| ||||| || || | || || ||||| |||||||| Sbjct 14500 TCCAAGGTGATAGTTTTGCCAGTCAAAGTTTTAACGAAAATCTGCAT 14454 >seq36344 Length=11671 Score = 140 bits (154), Expect = 6e-28 Identities = 178/244 (73%), Gaps = 1/244 (0%) Strand=Plus/Minus Query 68218 TGATGTGATTTTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTT 68277 ||| ||||||| | | || || || || || | ||||| || | || || || || | Sbjct 918 TGAAGTGATTT-ATTGACCACCACGGAGACGGAGGACCAAATGCAATGTTGATTCCTTCT 860 Query 68278 GGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTC 68337 ||||||| || ||||| | || | || ||||| | ||||| || || || || | | Sbjct 859 GGATGTTGTAGTCGGACAAGGTACGTCCGTCTTCGAGTTGCTTGCCAGCAAAAATCAAAC 800 Query 68338 TTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGG 68397 ||||||||| || || || ||||| ||||||||||| || || || || ||| || | Sbjct 799 GTTGTTGGTCTGGGGGGATTCCTTCTTTGTCTTGAATTTTAGCTTTTACATTCTCAATTG 740 Query 68398 TGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCT 68457 |||||| | ||| |||||||| || || |||||||| || | |||||||||||||| | Sbjct 739 TGTCTGACGGTTCGACTTCCAATGTAATAGTTTTTCCAGTCAAAGTCTTGACGAATATTT 680 Query 68458 GCAT 68461 |||| Sbjct 679 GCAT 676 Score = 113 bits (124), Expect = 8e-20 Identities = 116/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || |||||||| || | |||||||| ||||| || |||||||| || || || || || Sbjct 674 CCACCGCGAAGACGAAGGACCAAGTGAAGCGTAGATTCTTTTTGAATATTGTAGTCAGAC 615 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | ||||||||||| || || |||||||| || | | ||||| || |||||| Sbjct 614 AAAGTACGGCCATCTTCTAATTGTTTTCCGGCGAAAATCAAACGCTGTTGATCTGGTGGA 555 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGAC 68386 || |||||||| || || ||||| ||||| || Sbjct 554 ATACCTTCCTTATCCTGGATCTTGGCCTTTAC 523 >seq3660 Length=14069 Score = 140 bits (154), Expect = 6e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| || || || | ||||| || | || || || ||||| ||||| || ||| Sbjct 2517 CCTCCACGGAGACGGAGGACCAAATGCAATGTCGATTCCTTTTGAATGTTGTAGTCGCCC 2458 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | ||| || |||||||| || || || || || || || | | |||||| || ||||| Sbjct 2457 AATGTTCTGCCATCTTCCAATTGTTTGCCAGCAAAAATCAAGCGTTGTTGATCTGGTGGG 2398 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || |||||||| ||||||||||| |||||||| || || || || | | ||| ||| Sbjct 2397 ATTCCTTCCTTCTCTTGAATCTTAGCCTTGACATTTTCAATAGTATCCGAAGCTTCAACT 2338 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| ||||| || ||||| || | ||||||||||| || ||||| Sbjct 2337 TCCAATGTGATTGTCTTTCCAGTCAAAGTCTTGACGAAGATTTGCAT 2291 >seq31860 Length=14314 Score = 111 bits (122), Expect = 3e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 ||||| || | |||||||||||||| ||||| || ||| ||||| | |||||||| Sbjct 1270 ACCAAATGCAATGTGGACTCTTTTTGAATGTTGTAGTCGCTAAGTGTTTTGCCATCTTCC 1211 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 || || || || || || || | |||||| || || ||||| |||||||| || || ||| Sbjct 1210 AATTGTTTGCCAGCAAAAATCAATCTTTGCTGATCTGGTGGGATGCCTTCTTTATCCTGA 1151 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||| ||||| || || | |||| || |||| | || || |||||| Sbjct 1150 ATCTTCAATTTGACATTTTCAATAGAATCTGAGCCCTCAGCTTCAAGTGTTATTGTTTTT 1091 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || ||||| || | |||||| ||||| Sbjct 1090 CCGGTTAGGGTTTTAATGAATATTTGCAT 1062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 920692056748040