Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq144 149 1e-30 seq36344 123 6e-23 seq3660 116 9e-21 seq25532 104 6e-17 seq31860 102 2e-16 >seq144 Length=14776 Score = 149 bits (164), Expect = 1e-30 Identities = 173/232 (75%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| ||||| | ||||| | ||| | || || ||||||||||| |||| Sbjct 14000 CATG-CCACCACGGAGACGGAGTACCAAATGCAATGTCGACTCCTTTTGGATATTGTAGT 13942 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | | || || || ||||||||||||||||||||||| |||| |||||||||| Sbjct 13941 CAGACAAAGTACGGCCATCTTCTAATTGTTTTCCTGCGAAAATCAAACGCTGTTGATCTG 13882 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 |||||| ||||| ||||||||||| || || || ||||| || || | ||| | | Sbjct 13881 GTGGGATACCTTCCTTATCCTGGATCTTGGCCTTAACGTTCTCGATGGTATCCGAGGGCT 13822 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | ||||| | ||||| || || || |||| ||||||||||| || ||||| Sbjct 13821 CGACTTCCAAGGTGATGGTTTTGCCAGTCAATGTCTTGACGAAGATTTGCAT 13770 Score = 141 bits (156), Expect = 2e-28 Identities = 170/230 (74%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | ||| || | ||| | || ||||| || || || ||||| | Sbjct 13540 CCACCACGGAGACGAAGGACCAAATGCAAAGTAGACTCTTTCTGAATGTTGTAGTCAGAC 13481 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || ||||| ||||| ||||||||||| ||||| |||| |||||| ||| ||||| Sbjct 13480 AAAGTACGTCCATCTTCCAATTGTTTTCCAGCGAAAATCAAACGCTGCTGA---TCTGGA 13424 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || |||||||| || ||||| || |||||||||||||| |||| ||| | ||| Sbjct 13423 GGAATACCTTCTTTGTCTTGGATCTTAGCTTTCACGTTTTCAATAGTATCCGAAGGTTCG 13364 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| | |||||||| || ||||| | || |||||||| || ||||| Sbjct 13363 ACTTCCAATGTGATCGTTTTTCCGGTTAAGGTTTTGACGAAAATTTGCAT 13314 Score = 132 bits (146), Expect = 1e-25 Identities = 147/196 (75%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| || ||||| ||||||| | || ||||||||||| || || ||||| || ||| Sbjct 12936 TCTTTCTGAATATTGTAGTCGGACAAGGTACGTCCGTCTTCCAACTGCTTTCCAGCAAAG 12877 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| |||||| || ||| || ||||| ||||||||||| || || || ||||| Sbjct 12876 ATCAAACGCTGCTGGTCTGGTGGAATACCTTCCTTATCCTGGATCTTAGCCTTTACGTTC 12817 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| | || || || | ||||| ||||| || |||| ||||||||| Sbjct 12816 TCGATCGTATCAGATGGCTCGACCTCCAAAGTGATGGTCTTACCAGTCAATGTCTTGACG 12757 Query 288463 AATATCTGCATTATGT 288478 |||||||||||| ||| Sbjct 12756 AATATCTGCATTCTGT 12741 Score = 123 bits (136), Expect = 6e-23 Identities = 170/235 (72%), Gaps = 7/235 (3%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| ||||| | ||||| | ||| | || |||||||||||||| |||| Sbjct 14228 CATG-CCACCACGGAGACGGAGTACCAAATGCAATGTCGACTCTTTTTGGATATTGTAGT 14170 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | | ||||| || ||||| ||||| ||||| ||||| |||| ||||||||| || Sbjct 14169 CAGACAATGTGCGGCCATCTTCCAATTGCTTTCCAGCGAAAATCAAACGCTGTTG---AT 14113 Query 288362 CT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418 || ||||| ||||| ||||| || ||||| || || || ||||| || | ||| | Sbjct 14112 CTGGAGGGATGCCTTCCTTATCTTGAATTTTAGCCTTTACATTTTCAATGGTATCCGAGG 14053 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| | ||||| || || || || | || || ||||| || ||||| Sbjct 14052 GCTCGACTTCCAAGGTGATGGTTTTGCCAGTTAAGGTTTTCACGAAGATTTGCAT 13998 Score = 118 bits (130), Expect = 2e-21 Identities = 165/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || | ||| | || ||||| || || ||||| || | Sbjct 13200 CCACCACGGAGACGGAGGACCAAATGCAATGTCGACTCTTTCTGAATGTTATAATCTGAC 13141 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || ||||| ||||| ||||||||||| || ||||||| ||| || ||| |||||| Sbjct 13140 AGGGTACGTCCATCTTCCAATTGTTTTCCAGCAAAGATCAAACGTTGCTGA---TCTGGG 13084 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || ||||| ||||| || || || ||||| |||||||| || | ||| | || Sbjct 13083 GGGATACCTTCCTTATCTTGAATCTTGGCTTTAACGTTTTCAATGGTGTCGGAAGGCTCA 13024 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || | || || ||||| || |||| ||||||||||| || ||||| Sbjct 13023 ACCTCCAATGTAATGGTCTTTCCAGTCAACGTCTTGACGAAAATTTGCAT 12974 Score = 116 bits (128), Expect = 9e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||||||||| ||||| || |||| || || |||| ||||| ||||| ||||| ||||| Sbjct 10738 TTCTTTTTGAATATTGTAATCGGATAGGGTATGTCCATCTTCCAATTGCTTTCCAGCGAA 10679 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || || || |||||| |||||||||||| ||||| || || || | ||| | || Sbjct 10678 AATGAGGCGTTGTTGATCTGGTGGGATTCCTTCCTTATCTTGAATCTTGGTTTTAATATT 10619 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| || ||||| | ||| ||||| | || || || || ||||||| || ||||| Sbjct 10618 TTCAATGGAATCAGACCCTTCAACTTCTAAAGTTATGGTTTTACCGGTCAATGTTTTGAC 10559 Query 288462 GAATATCTGCAT 288473 || || ||||| Sbjct 10558 AAAGATTTGCAT 10547 Score = 114 bits (126), Expect = 3e-20 Identities = 168/235 (71%), Gaps = 7/235 (3%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| ||||| | ||||| | ||| | || || ||||||||||| |||| Sbjct 14456 CATG-CCACCACGGAGACGGAGTACCAAATGCAATGTCGACTCCTTTTGGATATTGTAGT 14398 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | | || || || |||||||||||||| || || || |||| ||||||||| || Sbjct 14397 CTGACAATGTACGGCCATCTTCTAATTGTTTGCCGGCAAAAATCAAACGCTGTTG---AT 14341 Query 288362 CT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418 || ||||| ||||| ||||| || ||||| ||||| || ||||| || | || | Sbjct 14340 CTGGAGGGATACCTTCCTTATCTTGAATTTTAGCTTTAACATTTTCGATTGTGTCCGAGG 14281 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| | ||||| || || || || | || || ||||| || ||||| Sbjct 14280 GCTCGACTTCCAAGGTGATGGTTTTGCCAGTTAAGGTTTTCACGAAGATTTGCAT 14226 Score = 109 bits (120), Expect = 1e-18 Identities = 142/195 (73%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||||||||| || || ||||| | || || ||||||||||| ||||| ||||| ||||| Sbjct 7511 TTCTTTTTGAATGTTGTAGTCAGATAGGGTACGTCCGTCTTCCAATTGCTTTCCAGCGAA 7570 Query 288342 GATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 || || || ||||| |||| || |||||||| ||||| || || || || || || Sbjct 7571 AATGAGGCGTTGTTG---ATCTGGAGGAATTCCTTCCTTATCTTGAATCTTGGCCTTAAC 7627 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 || || || ||||| ||| ||||| | || || || || ||||||| || || Sbjct 7628 ATTCTCAATGGAATCAGAACCTTCAACTTCTAAGGTTATGGTTTTACCGGTCAATGTTTT 7687 Query 288459 GACGAATATCTGCAT 288473 ||| || || ||||| Sbjct 7688 GACAAAGATTTGCAT 7702 >seq36344 Length=11671 Score = 123 bits (136), Expect = 6e-23 Identities = 168/233 (72%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || ||||| ||||| | || || | ||| | || ||| || ||||| || |||||| Sbjct 905 TGACCACCACGGAGACGGAGGACCAAATGCAATGTTGATTCCTTCTGGATGTTGTAGTCG 846 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 | | || ||||||||||| | ||| || || || || |||| ||| ||||| ||| Sbjct 845 GACAAGGTACGTCCGTCTTCGAGTTGCTTGCCAGCAAAAATCAAACGTTGTTGG---TCT 789 Query 288364 GGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT 288420 ||| ||||||||||| || || ||||| ||||| || || || || | || || | Sbjct 788 GGGGGGATTCCTTCTTTGTCTTGAATTTTAGCTTTTACATTCTCAATTGTGTCTGACGGT 729 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| | || || || || || |||| ||||||||||||||| ||||| Sbjct 728 TCGACTTCCAATGTAATAGTTTTTCCAGTCAAAGTCTTGACGAATATTTGCAT 676 Score = 120 bits (132), Expect = 7e-22 Identities = 123/161 (76%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 |||||||| || | ||| || | |||| ||| ||||||||| ||||| ||||| | Sbjct 674 CCACCGCGAAGACGAAGGACCAAGTGAAGCGTAGATTCTTTTTGAATATTGTAGTCAGAC 615 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || || || ||||||||||||||||| ||||| |||| |||||||||| ||| Sbjct 614 AAAGTACGGCCATCTTCTAATTGTTTTCCGGCGAAAATCAAACGCTGTTGATCTGGTGGA 555 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTAT 288407 || ||||| ||||||||||| || || || || ||||| || Sbjct 554 ATACCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCAAT 514 >seq3660 Length=14069 Score = 116 bits (128), Expect = 9e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| ||||| || || |||||| | | || | || ||||| |||||||| || || || Sbjct 2482 TTCCTTTTGAATGTTGTAGTCGCCCAATGTTCTGCCATCTTCCAATTGTTTGCCAGCAAA 2423 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 |||| || |||||| |||||||||||| || || || || || || || || || Sbjct 2422 AATCAAGCGTTGTTGATCTGGTGGGATTCCTTCCTTCTCTTGAATCTTAGCCTTGACATT 2363 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| |||| ||| | ||| ||||| | ||||| ||||| || |||| ||||||||| Sbjct 2362 TTCAATAGTATCCGAAGCTTCAACTTCCAATGTGATTGTCTTTCCAGTCAAAGTCTTGAC 2303 Query 288462 GAATATCTGCAT 288473 ||| || ||||| Sbjct 2302 GAAGATTTGCAT 2291 >seq25532 Length=5913 Score = 104 bits (114), Expect = 6e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 ||||||||||| | ||| || || | || | || ||||| |||||||| || || Sbjct 915 TGTCCACCGCGCAATCTGAGAACCAAGTGCAATGTAGACTCTTTCTGGATATTGTAATCA 974 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 | | || | ||||||| |||||||| || || || |||| | |||||| | Sbjct 975 CCCAATGTCCTAGCGTCTTCCAATTGTTTGCCAGCAAAAATCAATCTTTGTTGATCTGGT 1034 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||| |||||||||||||| ||||| | || || |||| || | ||| | || Sbjct 1035 GGGATGCCTTCTTTATCCTGAATTTTACCCTTGACACTTTCAATCGTGTCGGCTGCCTCA 1094 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| || ||||| || |||| || || ||||| || ||||| Sbjct 1095 ACTTCAAGCGTTATTGTCTTTCCTGTCAATGTTTTAACGAAAATTTGCAT 1144 >seq31860 Length=14314 Score = 102 bits (112), Expect = 2e-16 Identities = 162/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| ||||| | ||| || || | ||| | ||| |||||||| || || |||||| Sbjct 1289 TCCGCCGCGCAATCTTAGGACCAAATGCAATGTGGACTCTTTTTGAATGTTGTAGTCGCT 1230 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || || || ||||| |||||||| || || || |||| | || ||| ||| Sbjct 1229 AAGTGTTTTGCCATCTTCCAATTGTTTGCCAGCAAAAATCAATCTTTGCTGATCTGGTGG 1170 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTC 288422 ||| |||||||||||||| || ||| ||| || ||||| |||||||| || | || Sbjct 1169 GATGCCTTCTTTATCCTGAATCTTCAATTTGACATTTTCAATAGAATCTGAGCCC---TC 1113 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 |||| || || || || || ||||| || || || | |||||| ||||| Sbjct 1112 AGCTTCAAGTGTTATTGTTTTTCCGGTTAGGGTTTTAATGAATATTTGCAT 1062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178433812698246