Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq29867 98.7 2e-15 >seq29867 Length=4054 Score = 98.7 bits (108), Expect = 2e-15 Identities = 299/458 (65%), Gaps = 12/458 (3%) Strand=Plus/Plus Query 297254 GGATTGTAACTAGGGATATTAGTCGACCAACCGGTACCGATTCCACTCGAA-CCATTCAC 297312 ||||| | | | ||||| || ||||||||||| ||||| || || || | ||||| || Sbjct 2639 GGATTATGATTGGGGATTTTGGTCGACCAACCAGTACCAATACCT-TCAACTCCATTTAC 2697 Query 297313 CAGAATGCTCGGAATAACAGGCACATAATACTCTGGTTCGATCTTGTCACCGTCATCATA 297372 || | | || || || || | ||| | ||| || || | ||| ||||| | Sbjct 2698 CAAACACATGGGGATGACTGGAATATACCAAAGTGGCTCAATTCTCAAACCATCATCGTC 2757 Query 297373 CAGATATTTCAGAAGATTATCGTCC---GTATCGACGA--AAACCTGTCGAGTCTGAGGG 297427 || |||| || | |||||| | || || || || | |||| | | || Sbjct 2758 CAAGTATTCTAGCAAGGGATCGTCTAATGGATGGAAGATCAATCGTGTCAACGCAGA--- 2814 Query 297428 TTCAGTTTTGTGAAAATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAA 297487 || ||| |||||||| || || | ||| ||| |||||||| || | ||| | | Sbjct 2815 --CATTTTGGTGAAAATGTAACGAGGACTAGCGCTGTCCTTACCGCCATTCAAACGAGTT 2872 Query 297488 CCGAACTGGCCCTCCGGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCA 297547 || ||||| || | || |||| | | || |||||||| ||||| ||||||| || || Sbjct 2873 CCAAACTGACCTCCAGGAAACAGCAAATTTATGTTATTACTTCCAACATAATTTTGGGCC 2932 Query 297548 AGGTTCACGATGGTCCCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCA 297607 || || | || || || || || ||| ||||| |||||||| | |||||| Sbjct 2933 AGATTGATTATAGTACCGCATAGGGACATTTCTCCATGATGATAGGCAGACTTTTCTGCA 2992 Query 297608 ACGTAACCGCTGAACTGTGCAACCTTCACGTCGGTCGTCAAATTGCGCTTGAAAGCTGAA 297667 || | || || ||||||||||| || || | | ||| || |||||| | | Sbjct 2993 ACCGATCCAGACAATTGTGCAACCTTAACTTCCTTTTTATCATTACGTTTGAAACAAGTA 3052 Query 297668 TATATCACTTTCCGTTGAGAAGGTTTGAAACCATCAAC 297705 | || || || || ||| ||||||||| ||||| || Sbjct 3053 AACATAACCTTGCGCTGACCAGGTTTGAAGCCATCGAC 3090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1101738851097950