Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq71022 129 7e-25 >seq71022 Length=3779 Score = 129 bits (142), Expect = 7e-25 Identities = 599/944 (63%), Gaps = 39/944 (4%) Strand=Plus/Plus Query 113699 TGGGATTGATCGATGAAGCGTCCACGATCCGCCGCCATATCAATCACATCCTTCATCTTG 113758 ||||| ||||||||||| ||| ||||| || ||||| | || | | || | | Sbjct 915 TGGGACTGATCGATGAATGCTCCTCGATCTGCAGCCATTTTTATGGCCACTTTGACCGAA 974 Query 113759 ATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGG 113818 | |||||| || ||| |||| | | ||| ||| ||| || || | |||||||| Sbjct 975 ACTTCCCAAACGGTTTTGTACAATTCACGAATGTCAAATGGAATTTCTTCAATATTTTGA 1034 Query 113819 ATGGAGCCACCCGCCTTGACCATGAG---ATCCTTCATATCCTTTGACCAGAGACCAATC 113875 ||||| ||| ||| ||| | || |||||||| | ||| | |||| Sbjct 1035 ATGGA---ACCGTTATTGGCCAAAATTTTATTTTTCATATCATCGTCCCATA----AATC 1087 Query 113876 TTTTTGAG----ATCCTCCACGAGATGCTTATTGACAACAACAAACTCACCCGCGAGGGT 113931 || || ||| | | | ||| | ||||||||| || ||||||| ||| Sbjct 1088 GCGTTCAGTTAAATCTTTAAGCAAATGATGATTGACAACCTGGAATTCACCCGATAGGAC 1147 Query 113932 GCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTG 113991 |||| |||| || | ||||| || ||||| | |||||||| || | ||||| Sbjct 1148 ACGTCGATTGTAGACGTTTGATGTGTAAGGTTCAAATGATTCATTGTTTCCGAGAATTTG 1207 Query 113992 GGCGGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCT 114051 || || || || || ||||| ||||||| || ||| || | || ||| ||| Sbjct 1208 TGCAGTCGAAGCGGTTGGCATTGGTGCCAAAAGTAGGGAATTTCTGATACCTGTTTTGGC 1267 Query 114052 AATGCGTTCCTTGAGGGCGTCCCAGT--CGTA-----GTTGAGCTTTGTCTCCCCCTGCC 114104 ||| | ||| | | ||||| | | || |||| | ||| | |||| Sbjct 1268 AATTTTCTGCTTCAATTCATCCCAATTCCATAAATCTGTTG-GTTTTTTGTCCC------ 1320 Query 114105 ACATATCAAACTGGAGGATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGC 114164 |||| ||| |||| | || |||| |||| | || ||| | ||||| || | || Sbjct 1321 ACATGTCATACTGCAAAATGCCTTTACTAACTGGGCAGCCTTCATAAGTCTCATAGGTGC 1380 Query 114165 CCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAA 114224 | |||| || |||||||| | || || || | ||| | | ||| || ||||| |||| Sbjct 1381 CTTCAATTTCGGCCAATTCAGTACTAGCTTCCAAGGCACCATAATAAATCGTCTCGAAAA 1440 Query 114225 TGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATA 114284 | | |||| | | ||| || ||| || | | | || | |||||| Sbjct 1441 TTTGTTGGTTCAATAATTGGGCTTCTTCGCTCTCGTAAGGGTAACGCATTAGGATAAATG 1500 Query 114285 CATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAG 114344 |||| || | || || || || | ||||| || |||||||||||||| || ||| || Sbjct 1501 CATCAGCCATGCCCTGAACGCCAATTCCAATGGGACGATGTCTCATATTCGATGTTCTAG 1560 Query 114345 CGGTCT-CCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACC 114403 | ||| | |||||||| || ||| || | |||| | |||||| || || Sbjct 1561 C-TTCTGGGATCGGATAAAAGTTGACATCAATGATTTTATTCAAATTTTTCGTTACGGTT 1619 Query 114404 TTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCAT---TGACATAC 114460 ||||||| ||| | | || | | ||||||| || | ||||| | ||| || Sbjct 1620 TTTGTGACTTCTTTCAATTTCTTGAAATCAAA------CGTTTTTTCATTAGTAACAAAC 1673 Query 114461 TTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCT 114520 || | ||| ||||| |||| |||||| || | ||||| ||| | || || Sbjct 1674 ATATTCAAGGCAATTGAGGCCAAATTACAGACGGCAACTTCATCTTTACTTGAATATTCG 1733 Query 114521 ATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTT 114580 | ||| || |||||||| || | |||||||| || | || | ||| || || ||| Sbjct 1734 ACAATCTCTGTACACAAGTTGCTGCATTTAATGGTTCCAATATTTTGTTGGTTAGATTTT 1793 Query 114581 GTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTC 114624 ||||||| || || ||||| ||||| || ||||| ||||| || Sbjct 1794 CTGTTACAAGCGTCTTTGTAGAGCATATAAGGCGTACCCGTTTC 1837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596750593941560