Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq20332 96.9 4e-15 seq21274 93.3 5e-14 seq48608 87.8 2e-12 seq23277 87.8 2e-12 seq65663 86.0 7e-12 seq41431 84.2 2e-11 seq36068 82.4 8e-11 seq28917 82.4 8e-11 seq144 82.4 8e-11 >seq20332 Length=1572 Score = 96.9 bits (106), Expect = 4e-15 Identities = 80/97 (82%), Gaps = 2/97 (2%) Strand=Plus/Minus Query 56982 CAAATTAACGTTTATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCG 57041 || ||||| ||||| ||||| | ||||| || | | ||| |||||| ||||||||||| Sbjct 1170 CACATTAA--TTTATTAAAAAATATCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCG 1113 Query 57042 TGACAGGCGGACATACTCACCACTATACTACCGAGGA 57078 |||||||||| ||||| |||||||||||| |||||| Sbjct 1112 TGACAGGCGGGGATACTGACCACTATACTATCGAGGA 1076 >seq21274 Length=2047 Score = 93.3 bits (102), Expect = 5e-14 Identities = 69/81 (85%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 |||||| ||||||||| | | ||| |||||| ||||||||||||||||||||| |||| Sbjct 1109 AAAAATCTTCTCCTCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 1168 Query 57058 TCACCACTATACTACCGAGGA 57078 | |||||||||||| || ||| Sbjct 1169 TAACCACTATACTATCGGGGA 1189 >seq48608 Length=6774 Score = 87.8 bits (96), Expect = 2e-12 Identities = 56/61 (92%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 57020 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGAT 57079 ||| |||||| ||||||||||||||||||||| |||||||||||||||||| ||||||| Sbjct 3829 AATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACTATCGAGGAT 3770 Query 57080 T 57080 | Sbjct 3769 T 3769 >seq23277 Length=1262 Score = 87.8 bits (96), Expect = 2e-12 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| | |||| || | | ||| |||||| ||||||||||||||||||||| |||| Sbjct 286 AAAAAAATCCTCCCCGACGGGCAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 227 Query 57058 TCACCACTATACTACCGAGGA 57078 |||||||||||||| |||||| Sbjct 226 TCACCACTATACTATCGAGGA 206 >seq65663 Length=6885 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | ||| |||||| ||||||||||||||||||||| ||||||||||||| Sbjct 409 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 468 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 469 TACTATCGAGGA 480 >seq41431 Length=3534 Score = 84.2 bits (92), Expect = 2e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| | |||| || | | ||| |||||| ||||||||||||||||||||| |||| Sbjct 254 AAAAAGTACCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 313 Query 57058 TCACCACTATACTACCGAGGA 57078 | |||||||||||| |||||| Sbjct 314 TTACCACTATACTATCGAGGA 334 >seq36068 Length=2326 Score = 82.4 bits (90), Expect = 8e-11 Identities = 82/104 (79%), Gaps = 2/104 (2%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| | |||| || | | ||| |||||| |||||||| |||||||||||| |||| Sbjct 2126 AAAAAGATCCTCCCCGACGGGGAATTGAACCCCGGTCTCCCACGTGACAGGCGGGGATAC 2185 Query 57058 TCACCACTATACTACCGAGGA-TTGAATATATAACTTGAATATT 57100 | |||||||||||| |||||| ||| || | ||| |||| ||| Sbjct 2186 TGACCACTATACTATCGAGGACTTGTAT-TTTAATGTGAAGATT 2228 >seq28917 Length=2944 Score = 82.4 bits (90), Expect = 8e-11 Identities = 84/107 (79%), Gaps = 6/107 (6%) Strand=Plus/Minus Query 56992 TTTATGAAAAATTTT---CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGG 57048 ||||| ||||| || |||| || | | ||| |||||| |||||||||||||||||| Sbjct 1282 TTTATTAAAAAAATTAACCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGG 1223 Query 57049 CGGACATACTCACCACTATACTACCGAGGA-TTGAATATATAACTTG 57094 ||| ||||| ||||||||| || |||||| ||| ||| | ||||| Sbjct 1222 CGGGGATACTGACCACTATAGTATCGAGGACTTG--TATGTTACTTG 1178 >seq144 Length=14776 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 ||||| | | ||| | |||||||||||||| ||| || ||||||||||| || | | Sbjct 12972 CCTCCACGAAGACGGAGAACCAAATGCAATGTAGACTCTTTCTGAATATTGTAGTCGGAC 12913 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 | || || |||| || | |||||| ||||| || || | ||||||||||| | ||| Sbjct 12912 AAGGTACGTCCGTCTTCCAACTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCTGGTGGA 12853 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | | ||||| ||| ||| || || | || | | ||| || | || || Sbjct 12852 ATACCTTCCTTATCCTGGATCTTAGCCTTTACGTTCTCGATCGTATCAGATGGCTCGACC 12793 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 || | |||||||| || || || | ||||| || || || |||||| Sbjct 12792 TCCAAAGTGATGGTCTTACCAGTCAATGTCTTGACGAATATCTGCATT 12745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542664447048880