Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq144 122 6e-23 seq25532 116 3e-21 seq3660 111 1e-19 seq31860 100 2e-16 seq36344 87.8 1e-12 >seq144 Length=14776 Score = 122 bits (134), Expect = 6e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| ||| | || || || || || || || |||||||| || ||||||||| Sbjct 10773 CCACCTCTCAAGCGTAGGACCAAGTGTAGCGTCGATTCTTTTTGAATATTGTAATCGGAT 10714 Query 15010 AGAAT-TCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068 || | | || | ||||| ||||| || |||||| | || | || ||||| || ||| Sbjct 10713 AGGGTATGTC-CATCTTCCAATTGCTTTCCAGCGAAAATGAGGCGTTGTTGATCTGGTGG 10655 Query 15069 AATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 ||||||||||| || ||| ||| |||| | | |||| || | ||| ||| || Sbjct 10654 GATTCCTTCCTTATCTTGAATCTTGGTTTTAATATTTTCAATGGAATCAGACCCTTCAAC 10595 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 ||||| || ||||||||||| |||| ||||| ||||| ||||||||| Sbjct 10594 TTCTAAAGTTATGGTTTTACCGGTCAATGTTTTGACAAAGATTTGCATA 10546 Score = 107 bits (118), Expect = 1e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 14986 TCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTAT 15045 |||||||| |||||||| || || | | ||||||| ||||| || |||||| | Sbjct 7512 TCTTTTTGAATGTTGTAGTCAGATAGGGTACGTCCGTCTTCCAATTGCTTTCCAGCGAAA 7571 Query 15046 ATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATT 15105 || | || ||||| || |||||||||||||| || ||| ||| || ||| | Sbjct 7572 ATGAGGCGTTGTTGATCTGGAGGAATTCCTTCCTTATCTTGAATCTTGGCCTTAACATTC 7631 Query 15106 TCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACA 15165 || || | ||| | ||| || |||||||| ||||||||||| |||| ||||| ||| Sbjct 7632 TCAATGGAATCAGAACCTTCAACTTCTAAGGTTATGGTTTTACCGGTCAATGTTTTGACA 7691 Query 15166 AAAATTTGCATA 15177 || ||||||||| Sbjct 7692 AAGATTTGCATA 7703 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || ||||| | ||||| ||||| || |||||||| || | | | | | ||||| Sbjct 13522 ACCAAATGCAAAGTAGACTCTTTCTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCC 13463 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 |||||||| |||||| | ||||||||||| || || ||||| ||||| ||||| Sbjct 13462 AATTGTTTTCCAGCGAAAATCAAACGCTGCTGATCTGGAGGAATACCTTCTTTGTCTTGG 13403 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || || ||| || |||| |||||||| | ||| || || || || || ||||| Sbjct 13402 ATCTTAGCTTTCACGTTTTCAATAGTATCCGAAGGTTCGACTTCCAATGTGATCGTTTTT 13343 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || | ||||| || |||||||||||| Sbjct 13342 CCGGTTAAGGTTTTGACGAAAATTTGCATA 13313 Score = 100 bits (110), Expect = 2e-16 Identities = 150/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCTT 15025 || ||||| | || || |||||||| || ||||| || || ||| || | |||| Sbjct 14206 ACCAAATGCAATGTCGACTCTTTTTGGATATTGTAGTCA--GACAATGTGCGGCCATCTT 14149 Query 15026 CTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCAC 15085 | ||||| || |||||| | |||||||||||||| || || || |||||||| || Sbjct 14148 CCAATTGCTTTCCAGCGAAAATCAAACGCTGTTGATCTGGAGGGATGCCTTCCTTATCTT 14089 Query 15086 AAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTT 15145 |||||| |||||| |||| || ||||| || || || ||||| ||||||| Sbjct 14088 GAATTTTAGCCTTTACATTTTCAATGGTATCCGAGGGCTCGACTTCCAAGGTGATGGTTT 14029 Query 15146 TACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || || | ||||| || || |||||||| Sbjct 14028 TGCCAGTTAAGGTTTTCACGAAGATTTGCAT 13998 Score = 100 bits (110), Expect = 2e-16 Identities = 150/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCTT 15025 || ||||| | || || || ||||| || ||||| || ||| ||| || | |||| Sbjct 14434 ACCAAATGCAATGTCGACTCCTTTTGGATATTGTAGTC--TGACAATGTACGGCCATCTT 14377 Query 15026 CTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCAC 15085 ||||||||||||| || | |||||||||||||| || || || |||||||| || Sbjct 14376 CTAATTGTTTGCCGGCAAAAATCAAACGCTGTTGATCTGGAGGGATACCTTCCTTATCTT 14317 Query 15086 AAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTT 15145 |||||| ||| ||| |||| || || || || || || ||||| ||||||| Sbjct 14316 GAATTTTAGCTTTAACATTTTCGATTGTGTCCGAGGGCTCGACTTCCAAGGTGATGGTTT 14257 Query 15146 TACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || || | ||||| || || |||||||| Sbjct 14256 TGCCAGTTAAGGTTTTCACGAAGATTTGCAT 14226 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || ||||| | || || ||||| || ||||| ||||| || | | | ||||| Sbjct 13182 ACCAAATGCAATGTCGACTCTTTCTGAATGTTATAATCTGACAGGGTACGTCCATCTTCC 13123 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 |||||||| ||||| | |||||||| || || || || || |||||||| || | Sbjct 13122 AATTGTTTTCCAGCAAAGATCAAACGTTGCTGATCTGGGGGGATACCTTCCTTATCTTGA 13063 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || ||| ||| || |||| || || ||| | || || || || |||||||| || Sbjct 13062 ATCTTGGCTTTAACGTTTTCAATGGTGTCGGAAGGCTCAACCTCCAATGTAATGGTCTTT 13003 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || |||| || || || ||||||||||| Sbjct 13002 CCAGTCAACGTCTTGACGAAAATTTGCAT 12974 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || ||||| | || || || ||||| || ||||| ||| | | | | | ||||| Sbjct 14662 ACCAAATGCAATGTCGACTCCTTTTGAATATTGTAGTCGGACAAAGTGCGGCCATCTTCC 14603 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 |||||||| || ||| | ||||||||||| || || ||||| ||||| ||||| Sbjct 14602 AATTGTTTACCGGCGAAAATCAAACGCTGCTGATCTGGAGGAATACCTTCTTTGTCCTGG 14543 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || ||| || || |||| || ||||| || || || ||||| || ||||| Sbjct 14542 ATCTTGGCCTTAACGTTTTCAATGGTATCTGAGGGCTCAACTTCCAAGGTGATAGTTTTG 14483 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || |||| |||||| || ||||| ||||| Sbjct 14482 CCAGTCAAAGTTTTAACGAAAATCTGCAT 14454 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || ||||| | || || || ||||| || ||||| || | | | | | |||||| Sbjct 13978 ACCAAATGCAATGTCGACTCCTTTTGGATATTGTAGTCAGACAAAGTACGGCCATCTTCT 13919 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 |||||||| || ||| | |||||||||||||| || ||| || |||||||| || Sbjct 13918 AATTGTTTTCCTGCGAAAATCAAACGCTGTTGATCTGGTGGGATACCTTCCTTATCCTGG 13859 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || ||| || || | || || ||||| || || || ||||| |||||||| Sbjct 13858 ATCTTGGCCTTAACGTTCTCGATGGTATCCGAGGGCTCGACTTCCAAGGTGATGGTTTTG 13799 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || |||| || || || || ||||||||| Sbjct 13798 CCAGTCAATGTCTTGACGAAGATTTGCATA 13769 >seq25532 Length=5913 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| |||||||| | ||| || || | ||||| ||||| || || |||||||| | Sbjct 918 CCACCGCGCAATCTGAGAACCAAGTGCAATGTAGACTCTTTCTGGATATTGTAATCACCC 977 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | || |||||||| |||||||||||||| | ||||| | ||||| || ||| Sbjct 978 AATGTCCTAGCGTCTTCCAATTGTTTGCCAGCAAAAATCAATCTTTGTTGATCTGGTGGG 1037 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||| || || |||||| | || ||| |||| || || ||| || || Sbjct 1038 ATGCCTTCTTTATCCTGAATTTTACCCTTGACACTTTCAATCGTGTCGGCTGCCTCAACT 1097 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | || || || || ||||||| ||||| || ||||||||||| Sbjct 1098 TCAAGCGTTATTGTCTTTCCTGTCAATGTTTTAACGAAAATTTGCAT 1144 >seq3660 Length=14069 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || ||||| | || || || ||||| |||||||| |||| | |||| | ||||| Sbjct 2499 ACCAAATGCAATGTCGATTCCTTTTGAATGTTGTAGTCGCCCAATGTTCTGCCATCTTCC 2440 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 |||||||||||||| | ||||| || ||||| || ||| ||||||||||| || | Sbjct 2439 AATTGTTTGCCAGCAAAAATCAAGCGTTGTTGATCTGGTGGGATTCCTTCCTTCTCTTGA 2380 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || || || ||| |||| |||||||| | ||| || || || || || || || Sbjct 2379 ATCTTAGCCTTGACATTTTCAATAGTATCCGAAGCTTCAACTTCCAATGTGATTGTCTTT 2320 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || |||| ||| || || || |||||||| Sbjct 2319 CCAGTCAAAGTCTTGACGAAGATTTGCAT 2291 >seq31860 Length=14314 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || || |||||||||| || ||||| | || || |||||||| |||||||| ||||| Sbjct 1288 CCGCCGCGCAATCTTAGGACCAAATGCAATGTGGACTCTTTTTGAATGTTGTAGTCGCTA 1229 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || || | | ||||| |||||||||||||| | ||||| | || || || ||| Sbjct 1228 AGTGTTTTGCCATCTTCCAATTGTTTGCCAGCAAAAATCAATCTTTGCTGATCTGGTGGG 1169 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||| || || ||| || ||| ||| |||| |||| ||| || | Sbjct 1168 ATGCCTTCTTTATCCTGAATCTTCAATTTGACATTTTCAATAGAATCTGAGCCCTCAGCT 1109 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || | || || ||||| || || || ||||| | || ||||||||| Sbjct 1108 TCAAGTGTTATTGTTTTTCCGGTTAGGGTTTTAATGAATATTTGCATA 1061 >seq36344 Length=11671 Score = 87.8 bits (96), Expect = 1e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || ||||| ||||| |||||||| || ||||| || | | | | | |||||| Sbjct 656 ACCAAGTGAAGCGTAGATTCTTTTTGAATATTGTAGTCAGACAAAGTACGGCCATCTTCT 597 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 |||||||| || ||| | |||||||||||||| || |||||| |||||||| || Sbjct 596 AATTGTTTTCCGGCGAAAATCAAACGCTGTTGATCTGGTGGAATACCTTCCTTATCCTGG 537 Query 15088 ATTTTGCTTTTTACAATTTCTATAGT 15113 || ||| |||||| |||| || || Sbjct 536 ATCTTGGCCTTTACATTTTCAATGGT 511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357040245523745