Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq144 132 5e-26 seq25532 107 2e-18 seq36344 91.5 1e-13 seq31860 84.2 2e-11 >seq144 Length=14776 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||||||| | || ||||| |||||||||||||| ||| | Sbjct 14680 CCACCACGGAGACGGAGGACCAAATGCAATGTCGACTCCTTTTGAATATTGTAGTCGGAC 14621 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || | ||||| || ||| | ||||| ||||||||||| ||||| Sbjct 14620 AAAGTGCGGCCATCTTCCAATTGTTTACCGGCGAAAATCAAACGCTGCTGATCTGGAGGA 14561 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || || |||||| ||| || ||| | | ||| | ||| || | ||| ||| Sbjct 14560 ATACCTTCTTTGTCCTGGATCTTGGCCTTAACGTTTTCAATGGTATCTGAGGGCTCAACT 14501 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | ||| | |||||||| |||| |||||| || |||||||||||| Sbjct 14500 TCCAAGGTGATAGTTTTGCCAGTCAAAGTTTTAACGAAAATCTGCATG 14453 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||||||| | || ||||||||||| |||||||| || | Sbjct 14224 CCACCACGGAGACGGAGTACCAAATGCAATGTCGACTCTTTTTGGATATTGTAGTCAGAC 14165 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || | || ||||||||| | ||||| ||||| ||||| ||||| Sbjct 14164 AATGTGCGGCCATCTTCCAATTGCTTTCCAGCGAAAATCAAACGCTGTTGATCTGGAGGG 14105 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||| ||||| || ||||| ||| | | ||| | ||| |||| ||||||| Sbjct 14104 ATGCCTTCCTTATCTTGAATTTTAGCCTTTACATTTTCAATGGTATCCGAGGGCTCGACT 14045 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | ||| | |||||||| || | ||||| || || || |||||| Sbjct 14044 TCCAAGGTGATGGTTTTGCCAGTTAAGGTTTTCACGAAGATTTGCATG 13997 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||||||| | ||||||||||| ||||| ||||| || | Sbjct 13540 CCACCACGGAGACGAAGGACCAAATGCAAAGTAGACTCTTTCTGAATGTTGTAGTCAGAC 13481 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || | |||||||||||| | ||||| ||||||||||| ||||| Sbjct 13480 AAAGTACGTCCATCTTCCAATTGTTTTCCAGCGAAAATCAAACGCTGCTGATCTGGAGGA 13421 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || || ||||| ||| || || | | ||| | || |||| | |||||| Sbjct 13420 ATACCTTCTTTGTCTTGGATCTTAGCTTTCACGTTTTCAATAGTATCCGAAGGTTCGACT 13361 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | |||||| ||||| | ||||| || ||||| ||||| Sbjct 13360 TCCAATGTGATCGTTTTTCCGGTTAAGGTTTTGACGAAAATTTGCAT 13314 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||||||| | || ||||| |||||||| ||||| || | Sbjct 13768 CCACCACGGAGACGGAGGACCAAATGCAATGTCGACTCCTTTTGAATGTTGTAGTCTGAC 13709 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || | || ||||||||| | || | || || ||||| ||||| Sbjct 13708 AAGGTACGTCCATCTTCCAATTGCTTTCCAGCGAAAATGAGACGTTGTTGATCTGGAGGA 13649 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || || ||||| ||| || ||| | | ||| | || |||| ||||||| Sbjct 13648 ATACCTTCTTTGTCTTGGATCTTGGCCTTAACGTTTTCAATAGTATCCGAGGGCTCGACT 13589 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | ||||| || |||| ||||| |||||||||||||| Sbjct 13588 TCCAAAGTGATGGTTTTTCCTGTCAATGTTTTAACAAAAATCTGCAT 13542 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 |||||||| | ||||||||||| ||||||||||| ||| || || || || || Sbjct 12954 ACCAAATGCAATGTAGACTCTTTCTGAATATTGTAGTCGGACAAGGTACGTCCGTCTTCC 12895 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 | ||| |||||||| ||||||| |||||||| || || || || || ||||| ||| | Sbjct 12894 AACTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCTGGTGGAATACCTTCCTTATCCTGG 12835 Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084 || || ||| | | |||| || || | |||||| || | || | || || Sbjct 12834 ATCTTAGCCTTTACGTTCTCGATCGTATCAGATGGCTCGACCTCCAAAGTGATGGTCTTA 12775 Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || |||| || || || || |||||||| Sbjct 12774 CCAGTCAATGTCTTGACGAATATCTGCAT 12746 Score = 91.5 bits (100), Expect = 1e-13 Identities = 162/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||||||| | || |||||||| ||||| || ||||| | Sbjct 13200 CCACCACGGAGACGGAGGACCAAATGCAATGTCGACTCTTTCTGAATGTTATAATCTGAC 13141 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || | ||||||||||| ||||||| || |||||||| || || Sbjct 13140 AGGGTACGTCCATCTTCCAATTGTTTTCCAGCAAAGATCAAACGTTGCTGATCTGGGGGG 13081 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA--GTTGTTCGACGGTGTCCGTACTCTCGA 127064 || || ||||| | | ||| | | |||| | ||| ||| | |||||| | | ||| | Sbjct 13080 ATACCTTCCTTAT-CTTGAATCTTGGCTTTAACGTT-TTCAATGGTGTCGGAAGGCTCAA 13023 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 127117 | || | || | || || || |||| || || || ||||| |||||| || Sbjct 13022 CCTCCAATGTAATGGTCTTTCCAGTCAACGTCTTGACGAAAATTTGCATGCCT 12970 >seq25532 Length=5913 Score = 107 bits (118), Expect = 2e-18 Identities = 163/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 ||||||||| |||| | ||||| || | ||||||||||| || ||||||||||| || Sbjct 917 TCCACCGCGCAATCTGAGAACCAAGTGCAATGTAGACTCTTTCTGGATATTGTAATCACC 976 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || || | || || || | ||||| ||||| | ||||||| || ||||| || || Sbjct 977 CAATGTCCTAGCGTCTTCCAATTGTTTGCCAGCAAAAATCAATCTTTGTTGATCTGGTGG 1036 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||| || || ||| ||||| ||||| ||| | ||||| | ||| || Sbjct 1037 GATGCCTTCTTTATCCTGAATTTTACCCTTGACACTTTCAATCGTGTCGGCTGCCTCAAC 1096 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 127117 ||| | || | || || || |||| ||||| || ||||| |||||| || Sbjct 1097 TTCAAGCGTTATTGTCTTTCCTGTCAATGTTTTAACGAAAATTTGCATGCCT 1148 >seq36344 Length=11671 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || | ||||| || | |||||| ||||||||||||||||| || | Sbjct 674 CCACCGCGAAGACGAAGGACCAAGTGAAGCGTAGATTCTTTTTGAATATTGTAGTCAGAC 615 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| |||| |||||||| ||| | ||||| ||||| ||||| || || Sbjct 614 AAAGTACGGCCATCTTCTAATTGTTTTCCGGCGAAAATCAAACGCTGTTGATCTGGTGGA 555 Query 127007 ATGCCCTCCTTGTCCGTGATTTT 127029 || || ||||| ||| ||| || Sbjct 554 ATACCTTCCTTATCCTGGATCTT 532 >seq31860 Length=14314 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 126885 CTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGC 126944 |||| ||||| |||| | |||||||| | || |||||||||||||| ||||| |||| Sbjct 1290 CTCCGCCGCGCAATCTTAGGACCAAATGCAATGTGGACTCTTTTTGAATGTTGTAGTCGC 1231 Query 126945 CCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAG 127004 | || ||| || | ||||| ||||| | ||||||| |||||||| || | Sbjct 1230 TAAGTGTTTTGCCATCTTCCAATTGTTTGCCAGCAAAAATCAATCTTTGCTGATCTGGTG 1171 Query 127005 GTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGA 127064 | ||||| || || ||| || ||| |||| | ||| | | || | | ||| Sbjct 1170 GGATGCCTTCTTTATCCTGAATCTTCAATTTGACATTTTCAATAGAATCTGAGCCCTCAG 1111 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| | || | ||||| ||||| || ||||| | || || ||||| Sbjct 1110 CTTCAAGTGTTATTGTTTTTCCGGTTAGGGTTTTAATGAATATTTGCAT 1062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475020799773680