Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq71022 138 1e-27 >seq71022 Length=3779 Score = 138 bits (152), Expect = 1e-27 Identities = 349/528 (66%), Gaps = 11/528 (2%) Strand=Plus/Plus Query 116062 TCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATAT 116121 |||||||| ||| |||| | || |||| |||| | || ||| | |||||||| Sbjct 1317 TCCCACATGTCATACTGCAAAATGCCTTTACTAACTGGGCAGCCTTCATAAGTCTCATAG 1376 Query 116122 GGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCA 116181 | ||| |||| || |||||||| | || || || | ||| | | ||| || ||||| Sbjct 1377 GTGCCTTCAATTTCGGCCAATTCAGTACTAGCTTCCAAGGCACCATAATAAATCGTCTCG 1436 Query 116182 AAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAAATA 116241 ||||| | |||| | | ||| || ||| || | | | ||| | ||| Sbjct 1437 AAAATTTGTTGGTTCAATAATTGGGCTTCTTCGCTCTCGTAAGGGTAACGCATTAGGATA 1496 Query 116242 AATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTT 116301 ||| |||| || | || || || || | ||||| || |||||||||||||| || || Sbjct 1497 AATGCATCAGCCATGCCCTGAACGCCAATTCCAATGGGACGATGTCTCATATTCGATGTT 1556 Query 116302 CGAGCGGTCTCC-ACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGAC 116360 | ||| ||| | |||||||| || ||| || | |||| | |||||| || || Sbjct 1557 CTAGCT-TCTGGGATCGGATAAAAGTTGACATCAATGATTTTATTCAAATTTTTCGTTAC 1615 Query 116361 AACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTG---AC 116417 ||||||| ||| | | || | | ||||||| || | |||||| || Sbjct 1616 GGTTTTTGTGACTTCTTTCAATTTCTTGAAATCAAAC------GTTTTTTCATTAGTAAC 1669 Query 116418 ATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTA 116477 | || || | ||| ||||| |||| |||||| || | ||||| ||| | || Sbjct 1670 AAACATATTCAAGGCAATTGAGGCCAAATTACAGACGGCAACTTCATCTTTACTTGAATA 1729 Query 116478 CTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGA 116537 || | ||| || |||||||| || | |||||||| || | || | ||| || || Sbjct 1730 TTCGACAATCTCTGTACACAAGTTGCTGCATTTAATGGTTCCAATATTTTGTTGGTTAGA 1789 Query 116538 CTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTC 116585 ||| ||||||| || || |||||||||||||| ||||| ||||| || Sbjct 1790 TTTTCTGTTACAAGCGTCTTTGTAGAGCATATAAGGCGTACCCGTTTC 1837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 612887887488120