Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq144 129 1e-24 seq36344 86.0 1e-11 >seq144 Length=14776 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | || | ||| ||||| || || | ||||||||||| |||||| | ||||||| Sbjct 13525 AGGACCAAATGCAAAGTAGACTCTTTCTGAATGTTGTAGTCAGACAAAGTACGTCCATCT 13466 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| || ||||| ||||| || | ||||||||| || ||| ||| |||||| || Sbjct 13465 TCCAATTGTTTTCCAGCGAAAATCAAACGCTGCTGATCTGGAGGAATACCTTCTTTGTCT 13406 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| |||||| ||| | || || | | ||| || ||||| |||||||| Sbjct 13405 TGGATCTTAGCTTTCACGTTTTCAATAGTATCCGAAGGTTCGACTTCCAATGTGATCGTT 13346 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | ||||| || |||||||| Sbjct 13345 TTTCCGGTTAAGGTTTTGACGAAAATTTG 13317 Score = 129 bits (142), Expect = 1e-24 Identities = 145/194 (75%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 |||||||||||||| | |||||||| | |||||| | |||||||||| || || ||| Sbjct 14650 GTCGACTCCTTTTGAATATTGTAGTCGGACAAAGTGCGGCCATCTTCCAATTGTTTACCG 14591 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTC 199552 ||||| || | ||||||||| || ||| ||| |||||| ||||| ||||| ||| Sbjct 14590 GCGAAAATCAAACGCTGCTGATCTGGAGGAATACCTTCTTTGTCCTGGATCTTGGCCTTA 14531 Query 199553 ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTT 199612 ||| ||| | ||| |||| | || || ||||| ||||| || || || || | |||| Sbjct 14530 ACGTTTTCAATGGTATCTGAGGGCTCAACTTCCAAGGTGATAGTTTTGCCAGTCAAAGTT 14471 Query 199613 TTCACAAAAATTTG 199626 || || ||||| || Sbjct 14470 TTAACGAAAATCTG 14457 Score = 125 bits (138), Expect = 2e-23 Identities = 144/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 |||||||||||||| | ||||||||| | ||| || | ||||||||||| |||||||| Sbjct 13738 GTCGACTCCTTTTGAATGTTGTAGTCTGACAAGGTACGTCCATCTTCCAATTGCTTTCCA 13679 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTC 199552 ||||| |||||||| || || || ||| ||| |||||| || || ||||| ||| Sbjct 13678 GCGAAAATGAGACGTTGTTGATCTGGAGGAATACCTTCTTTGTCTTGGATCTTGGCCTTA 13619 Query 199553 ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTT 199612 ||| ||| | || || | | || || ||||| ||||| || || || || | ||| Sbjct 13618 ACGTTTTCAATAGTATCCGAGGGCTCGACTTCCAAAGTGATGGTTTTTCCTGTCAATGTT 13559 Query 199613 TTCACAAAAATTTG 199626 || |||||||| || Sbjct 13558 TTAACAAAAATCTG 13545 Score = 107 bits (118), Expect = 5e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 || ||||| || || | |||||||| | ||| || | ||| ||||||| ||||||||| Sbjct 12942 GTAGACTCTTTCTGAATATTGTAGTCGGACAAGGTACGTCCGTCTTCCAACTGCTTTCCA 12883 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTC 199552 || ||||| | |||||||||||| || ||| ||||| ||||| ||||| ||| Sbjct 12882 GCAAAGATCAAACGCTGCTGGTCTGGTGGAATACCTTCCTTATCCTGGATCTTAGCCTTT 12823 Query 199553 ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTT 199612 ||| |||| || || | || || || ||||| ||||| |||||||| || | || Sbjct 12822 ACGTTCTCGATCGTATCAGATGGCTCGACCTCCAAAGTGATGGTCTTACCAGTCAATGTC 12763 Query 199613 TTCACAAAAATTTG 199626 || || || || || Sbjct 12762 TTGACGAATATCTG 12749 Score = 102 bits (112), Expect = 2e-16 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 |||||||||||||||| |||||||||| |||||| | |||||||| | || ||||| Sbjct 13966 GTCGACTCCTTTTGGATATTGTAGTCAGACAAAGTACGGCCATCTTCTAATTGTTTTCCT 13907 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTC 199552 ||||| || | |||||| || || || || ||||| ||||| ||||| ||| Sbjct 13906 GCGAAAATCAAACGCTGTTGATCTGGTGGGATACCTTCCTTATCCTGGATCTTGGCCTTA 13847 Query 199553 ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTT 199612 ||| |||| ||| || | | || || ||||| ||||| || || || || | || Sbjct 13846 ACGTTCTCGATGGTATCCGAGGGCTCGACTTCCAAGGTGATGGTTTTGCCAGTCAATGTC 13787 Query 199613 TTCACAAAAATTTG 199626 || || || ||||| Sbjct 13786 TTGACGAAGATTTG 13773 Score = 96.9 bits (106), Expect = 8e-15 Identities = 140/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 |||||||||||||||| |||||||| | ||| || | |||||||| | || || ||| Sbjct 14422 GTCGACTCCTTTTGGATATTGTAGTCTGACAATGTACGGCCATCTTCTAATTGTTTGCCG 14363 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGC-TT 199551 || || || | |||||| || || ||| || ||||| || ||||| ||| || || Sbjct 14362 GCAAAAATCAAACGCTGTTGATCTGGAGGGATACCTTCCTTATCTTGAAT-TTTAGCTTT 14304 Query 199552 CACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGT 199611 || ||||| ||||| | | || || ||||| ||||| || || || || | || Sbjct 14303 AACATTTTCGATTGTGTCCGAGGGCTCGACTTCCAAGGTGATGGTTTTGCCAGTTAAGGT 14244 Query 199612 TTTCACAAAAATTTG 199626 |||||| || ||||| Sbjct 14243 TTTCACGAAGATTTG 14229 Score = 87.8 bits (96), Expect = 4e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 199439 TCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAG 199498 || ||||| | ||||||||||| | || | ||| ||||||| |||||||| ||||| Sbjct 7512 TCTTTTTGAATGTTGTAGTCAGATAGGGTACGTCCGTCTTCCAATTGCTTTCCAGCGAAA 7571 Query 199499 ATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGAT 199558 ||||| || || || || ||| ||||||||| || |||||||| ||| || Sbjct 7572 ATGAGGCGTTGTTGATCTGGAGGAATTCCTTCCTTATCTTGAATCTTGGCCTTAACATTC 7631 Query 199559 TCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACA 199618 || | || || | ||| || || || || || || ||||| || | ||||| ||| Sbjct 7632 TCAATGGAATCAGAACCTTCAACTTCTAAGGTTATGGTTTTACCGGTCAATGTTTTGACA 7691 Query 199619 AAAATTTG 199626 || ||||| Sbjct 7692 AAGATTTG 7699 Score = 84.2 bits (92), Expect = 5e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 |||||||| || || | ||| || || | || || | ||||||||||| || ||||| Sbjct 13170 GTCGACTCTTTCTGAATGTTATAATCTGACAGGGTACGTCCATCTTCCAATTGTTTTCCA 13111 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTC 199552 || ||||| | ||| ||||| || || || ||||| || |||||||| || Sbjct 13110 GCAAAGATCAAACGTTGCTGATCTGGGGGGATACCTTCCTTATCTTGAATCTTGGCTTTA 13051 Query 199553 ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTT 199612 ||| ||| | |||||| | | || || ||||| || || ||||| || || | || Sbjct 13050 ACGTTTTCAATGGTGTCGGAAGGCTCAACCTCCAATGTAATGGTCTTTCCAGTCAACGTC 12991 Query 199613 TTCACAAAAATTTG 199626 || || |||||||| Sbjct 12990 TTGACGAAAATTTG 12977 >seq36344 Length=11671 Score = 86.0 bits (94), Expect = 1e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||| | ||| || || || || ||||| | |||||||||| |||||| Sbjct 668 CGAAGACGAAGGACCAAGTGAAGCGTAGATTCTTTTTGAATATTGTAGTCAGACAAAGTA 609 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||| | || ||||||||||| || | |||||| || || || ||| ||| Sbjct 608 CGGCCATCTTCTAATTGTTTTCCGGCGAAAATCAAACGCTGTTGATCTGGTGGAATACCT 549 Query 199529 TCTCGCTCCTGAATCTT 199545 || ||||| ||||| Sbjct 548 TCCTTATCCTGGATCTT 532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177701770925719