Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq144 107 2e-18 seq36344 84.2 2e-11 >seq144 Length=14776 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 |||| ||||||||| ||||||||| |||||||||||||| | |||||| | || || Sbjct 14662 ACCAAATGCAATGTCGACTCCTTTTGAATATTGTAGTCGGACAAAGTGCGGCCATCTTCC 14603 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 | || || |||||||| ||||| |||||||| || | || | | || |||||| | Sbjct 14602 AATTGTTTACCGGCGAAAATCAAACGCTGCTGATCTGGAGGAATACCTTCTTTGTCCTGG 14543 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 ||||| ||| | | | | || || | || || |||| ||||| |||||| Sbjct 14542 ATCTTGGCCTTAACGTTTTCAATGGTATCTGAGGGCTCAACTTCCAAGGTGATAGTTTTG 14483 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || |||| |||||||| || || ||||| Sbjct 14482 CCAGTCAAAGTTTTAACGAAAATCTGCAT 14454 Score = 105 bits (116), Expect = 8e-18 Identities = 163/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||| | | ||| | |||| |||||||||| ||| || || ||||||||||||| Sbjct 12974 TGCCTCCACGAAGACGGAGAACCAAATGCAATGTAGACTCTTTCTGAATATTGTAGTCGG 12915 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | | || || |||| || | |||||| || || || ||||| ||||||||||| | | Sbjct 12914 ACAAGGTACGTCCGTCTTCCAACTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCTGGTG 12855 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | | ||||| ||| |||||| ||| | || | | ||| || | || | Sbjct 12854 GAATACCTTCCTTATCCTGGATCTTAGCCTTTACGTTCTCGATCGTATCAGATGGCTCGA 12795 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 | |||| |||||||| || || |||| || || || || || |||||| || Sbjct 12794 CCTCCAAAGTGATGGTCTTACCAGTCAATGTCTTGACGAATATCTGCATTCTG 12742 Score = 102 bits (112), Expect = 9e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 |||| ||||||||| ||||||||||||||||||||| || | ||| || | || || Sbjct 13978 ACCAAATGCAATGTCGACTCCTTTTGGATATTGTAGTCAGACAAAGTACGGCCATCTTCT 13919 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 | || || || ||||| ||||| ||||| || || | || | | ||||| ||| | Sbjct 13918 AATTGTTTTCCTGCGAAAATCAAACGCTGTTGATCTGGTGGGATACCTTCCTTATCCTGG 13859 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 ||||| ||| | || | | || || | || || |||| |||||||||||| Sbjct 13858 ATCTTGGCCTTAACGTTCTCGATGGTATCCGAGGGCTCGACTTCCAAGGTGATGGTTTTG 13799 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || |||| || || || ||||||||||| Sbjct 13798 CCAGTCAATGTCTTGACGAAGATTTGCAT 13770 >seq36344 Length=11671 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 |||| ||||||||| ||||| ||||| ||||||||||| | || || |||| ||| Sbjct 884 ACCAAATGCAATGTTGATTCCTTCTGGATGTTGTAGTCGGACAAGGTACGTCCGTCTTCG 825 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 || |||||||| || || ||||| || || ||||| | || | | || ||||| Sbjct 824 AGTTGCTTGCCAGCAAAAATCAAACGTTGTTGGTCTGGGGGGATTCCTTCTTTGTCTTGA 765 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 || || || | || | | ||||| || ||| || |||| || || ||||| Sbjct 764 ATTTTAGCTTTTACATTCTCAATTGTGTCTGACGGTTCGACTTCCAATGTAATAGTTTTT 705 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || |||| || || || || |||||||| Sbjct 704 CCAGTCAAAGTCTTGACGAATATTTGCAT 676 Score = 82.4 bits (90), Expect = 9e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 |||| ||||||||| ||||||||| |||||||||||||| | ||| || | || || Sbjct 103 ACCAAATGCAATGTCGACTCCTTTTGAATATTGTAGTCGGACAAAGTACGGCCATCTTCC 44 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 | || || |||||||| ||||| |||||||| || Sbjct 43 AATTGTTTACCGGCGAAAATCAAACGCTGCTGATC 9 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564667813031640