Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq144 127 1e-24 seq36344 104 2e-17 >seq144 Length=14776 Score = 127 bits (140), Expect = 1e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| || ||||||||||| || || ||||| ||||| || |||| | Sbjct 14680 CCACCACGGAGACGGAGGACCAAATGCAATGTCGACTCCTTTTGAATATTGTAGTCGGAC 14621 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 ||| ||| |||| ||||||||||| ||| | ||||| |||||||||||||| | || Sbjct 14620 AAAGTGCGGCCATCTTCCAATTGTTTACCGGCGAAAATCAAACGCTGCTGATCTGGAGGA 14561 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||||||||| || || |||| | | | || |||| | || || Sbjct 14560 ATACCTTCTTTGTCCTGGATCTTGGCCTTAACGTTTTCAATGGTATCTGAGGGCTCAACT 14501 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 ||||| || || ||||| || || |||||||| ||||| ||||||||| Sbjct 14500 TCCAAGGTGATAGTTTTGCCAGTCAAAGTTTTAACGAAAATCTGCATG 14453 Score = 120 bits (132), Expect = 2e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || || | ||| |||||||||||||| || || ||||| ||||| || || | Sbjct 14453 GCCACCACGGAGACGGAGTACCAAATGCAATGTCGACTCCTTTTGGATATTGTAGTCTGA 14394 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 ||| || |||| || |||||||| ||| ||||||| |||||||| ||||| | || Sbjct 14393 CAATGTACGGCCATCTTCTAATTGTTTGCCGGCAAAAATCAAACGCTGTTGATCTGGAGG 14334 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671 | ||||| || || ||||| ||||| | | | |||||| | | || || Sbjct 14333 GATACCTTCCTTATCTTGAATTTTAGCTTTAACATTTTCGATTGTGTCCGAGGGCTCGAC 14274 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 ||||| || || ||||| || ||||| ||||| |||||||| |||||| Sbjct 14273 TTCCAAGGTGATGGTTTTGCCAGTTAAGGTTTTCACGAAGATTTGCATG 14225 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| || |||||||||||||| ||||| || || || || || | | Sbjct 13540 CCACCACGGAGACGAAGGACCAAATGCAAAGTAGACTCTTTCTGAATGTTGTAGTCAGAC 13481 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 ||| ||| |||| ||||||||||| || | ||||| |||||||||||||| | || Sbjct 13480 AAAGTACGTCCATCTTCCAATTGTTTTCCAGCGAAAATCAAACGCTGCTGATCTGGAGGA 13421 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||||||||| || || ||| | | | | || || | ||| || Sbjct 13420 ATACCTTCTTTGTCTTGGATCTTAGCTTTCACGTTTTCAATAGTATCCGAAGGTTCGACT 13361 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| || || ||||| || ||||| ||||| ||||| || ||||| Sbjct 13360 TCCAATGTGATCGTTTTTCCGGTTAAGGTTTTGACGAAAATTTGCAT 13314 Score = 107 bits (118), Expect = 1e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || || | ||| |||||||||||||| || |||||||| ||||| || || | Sbjct 14225 GCCACCACGGAGACGGAGTACCAAATGCAATGTCGACTCTTTTTGGATATTGTAGTCAGA 14166 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 ||| ||| |||| |||||||| || || | ||||| |||||||| ||||| | || Sbjct 14165 CAATGTGCGGCCATCTTCCAATTGCTTTCCAGCGAAAATCAAACGCTGTTGATCTGGAGG 14106 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671 | |||||| || || ||||| || | | | | || || | | || || Sbjct 14105 GATGCCTTCCTTATCTTGAATTTTAGCCTTTACATTTTCAATGGTATCCGAGGGCTCGAC 14046 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 ||||| || || ||||| || ||||| ||||| |||||||| |||||| Sbjct 14045 TTCCAAGGTGATGGTTTTGCCAGTTAAGGTTTTCACGAAGATTTGCATG 13997 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| || ||||||||||| || ||||| || || |||||||| | | Sbjct 13200 CCACCACGGAGACGGAGGACCAAATGCAATGTCGACTCTTTCTGAATGTTATAATCTGAC 13141 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | ||| |||| ||||||||||| || |||| || ||||| |||||||| | ||| Sbjct 13140 AGGGTACGTCCATCTTCCAATTGTTTTCCAGCAAAGATCAAACGTTGCTGATCTGGGGGG 13081 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||| || || || || ||||| | | | ||||| | || || Sbjct 13080 ATACCTTCCTTATCTTGAATCTTGGCTTTAACGTTTTCAATGGTGTCGGAAGGCTCAACC 13021 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 ||||| ||||| || || || || || || || ||||| || |||||| Sbjct 13020 TCCAATGTAATGGTCTTTCCAGTCAACGTCTTGACGAAAATTTGCATG 12973 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || || | ||| |||||||||||||| || || ||||| ||||| || || | Sbjct 13997 GCCACCACGGAGACGGAGTACCAAATGCAATGTCGACTCCTTTTGGATATTGTAGTCAGA 13938 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 |||| || |||| || |||||||| || | ||||| |||||||| ||||| | || Sbjct 13937 CAAAGTACGGCCATCTTCTAATTGTTTTCCTGCGAAAATCAAACGCTGTTGATCTGGTGG 13878 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671 | ||||| || || || || |||| || | | || || | | || || Sbjct 13877 GATACCTTCCTTATCCTGGATCTTGGCCTTAACGTTCTCGATGGTATCCGAGGGCTCGAC 13818 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| || || ||||| || || || || || |||||||| ||||| Sbjct 13817 TTCCAAGGTGATGGTTTTGCCAGTCAATGTCTTGACGAAGATTTGCAT 13770 >seq36344 Length=11671 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| || ||||||||||| || ||| || || || || || |||| | Sbjct 902 CCACCACGGAGACGGAGGACCAAATGCAATGTTGATTCCTTCTGGATGTTGTAGTCGGAC 843 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || ||| | || || | ||| || || ||||||| ||||| || || || | ||| Sbjct 842 AAGGTACGTCCGTCTTCGAGTTGCTTGCCAGCAAAAATCAAACGTTGTTGGTCTGGGGGG 783 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||||||||| ||||| ||| | || | | |||||||| ||| || Sbjct 782 ATTCCTTCTTTGTCTTGAATTTTAGCTTTTACATTCTCAATTGTGTCTGACGGTTCGACT 723 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| ||||| ||||| || || ||||| || ||||| || ||||| Sbjct 722 TCCAATGTAATAGTTTTTCCAGTCAAAGTCTTGACGAATATTTGCAT 676 Score = 87.8 bits (96), Expect = 1e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| || ||||||||||| || || ||||| ||||| || |||| | Sbjct 121 CCACCACGGAGACGGAGGACCAAATGCAATGTCGACTCCTTTTGAATATTGTAGTCGGAC 62 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATC 39605 ||| || |||| ||||||||||| ||| | ||||| |||||||||||||| Sbjct 61 AAAGTACGGCCATCTTCCAATTGTTTACCGGCGAAAATCAAACGCTGCTGATC 9 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347027709829781