Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq71022 109 7e-19 seq1270 87.8 2e-12 >seq71022 Length=3779 Score = 109 bits (120), Expect = 7e-19 Identities = 593/939 (63%), Gaps = 23/939 (2%) Strand=Plus/Minus Query 112296 TCTCAAACCGAGACTGGTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGT 112355 |||||| || || ||||| || |||||||| ||||||||||| |||||| ||| | Sbjct 1846 TCTCAAGTTGAAACGGGTACGCCTTATATGCTCTACAAAGACGCTTGTAACAGAAAATCT 1787 Query 112356 AATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTT 112415 || ||| | ||| | || || || | |||| | |||||||| || | |||| | Sbjct 1786 AACCAACAAAATATTGGAACCATTAAATGCAGCAACTTGTGTACAGAGATTGTCGAATAT 1727 Query 112416 ACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTG 112475 || |||||||| || || ||||| | || ||||| || | | || ||| Sbjct 1726 TCAAGTAAAGATGAAGTTGCCGTCTGTAATTTGGCCTCAATTGCCTTGAATATGTTTGT- 1668 Query 112476 GATCCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACA 112535 | | | ||| || ||||||| | ||| | | ||||| || ||||| || || Sbjct 1667 --TACTAATGAAAAAACGTTTGATTTCAAGAAATTGAAAGAAGTCACAAAAACCGTAACG 1610 Query 112536 AAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGT-TGAGACTGCTCGTAAATC 112594 ||||| | || | | | |||||| || ||||| || | ||| ||| | | ||| Sbjct 1609 AAAAATTTGAATAAAATCATTGATGTCAACTTTTATCCGATCCCAGA-AGCTAGAACATC 1551 Query 112595 TAATATGAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCT 112654 ||||||||||| ||||| ||||| | || || || || | || |||| ||| || || Sbjct 1550 GAATATGAGACATCGTCCCATTGGAATTGGCGTTCAGGGCATGGCTGATGCATTTATCCT 1491 Query 112655 TTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGAC 112714 || || | | || ||| ||||| | | | || | || || ||||| Sbjct 1490 AATGCGTTACCCTTACGAGAGCGAAGAAGCCCAATTATTGAACCAACAAATTTTCGAGAC 1431 Query 112715 AATGTATCACGCCGCTCTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGA 112774 || ||| | | || | || || ||| | || ||||| || |||| || | ||||| Sbjct 1430 GATTTATTATGGTGCCTTGGAAGCTAGTACTGAATTGGCCGAAATTGAAGGCACCTATGA 1371 Query 112775 AACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGA 112834 || | ||| || | |||| | |||| | | || | ||| ||||||| | | Sbjct 1370 GACTTATGAAGGCTGCCCAGTTAGTAAAGGCATTTTGCAGTATGACATGTGGG-ACAAAA 1312 Query 112835 GACCA--AGCTTCACTACGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTT 112892 |||| || || | | | ||||| | | ||| | || | | ||| | Sbjct 1311 AACCAACAGATTTA-TGGAATTGGGATGAATTGAAGCAGAAAATTGCCAAAACAGGTATC 1253 Query 112893 CGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAAT 112952 | || || | |||||||||||||||| || || || |||||||| | || || Sbjct 1252 AGAAATTCCCTACTTTTGGCACCAATGCCAACCGCTTCGACTGCACAAATTCTCGGAAAC 1193 Query 112953 AATGAATGCTTTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAG 113012 ||||||| |||||||| ||||| | ||| |||| || | ||| |||| || Sbjct 1192 AATGAATCATTTGAACCTTACACATCAAACGTCTACAATCGACGTGTCCTATCGGGTGAA 1133 Query 113013 TTTGTGATTGTCAACAAGCATCTCGT----GGATGACCTCAAAGAGATTGGTCTCTGGTC 113068 || | ||||||| | ||| | | | | | || || | |||| | ||| Sbjct 1132 TTCCAGGTTGTCAATCATCATTTGCTTAAAGATTTAACTGAACGCGATT----TATGGGA 1077 Query 113069 CAAGGATATGAAGGATCTCATGGTGAAAGCGGGT---GGTTCCATTCAAAATATTGTGGA 113125 | | |||||||| || || || || | ||||||||||||||||||| || Sbjct 1076 CGATGATATGAAAAATAAAATTTTG---GCCAATAACGGTTCCATTCAAAATATTGAAGA 1020 Query 113126 TATTCCAGATGAAATTAAGAAGTTGTACCGCACAGTTTGGGAAATCAAGATGAAGGATGT 113185 |||||| ||| ||| | |||||| || ||||||||| | | | || | | Sbjct 1019 AATTCCATTTGACATTCGTGAATTGTACAAAACCGTTTGGGAAGTTTCGGTCAAAGTGGC 960 Query 113186 CATTGACATGGCCGCAGATCGTGGTCGCTTCATTGATCA 113224 ||| | ||||| |||||||| || ||||| ||||| Sbjct 959 CATAAAAATGGCTGCAGATCGAGGAGCATTCATCGATCA 921 >seq1270 Length=21014 Score = 87.8 bits (96), Expect = 2e-12 Identities = 256/386 (66%), Gaps = 10/386 (3%) Strand=Plus/Plus Query 102240 ATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATC 102299 |||| ||||| ||||| || || || ||||| ||||| ||||| ||||| || || Sbjct 10374 ATTTTCTGGCTTAAGAAACGTGGCCTTATGCCTGGTCTGACATTCTCAAACGAACTCATT 10433 Query 102300 TCTCGTGACGAGGGACTCCACCAAGAGTTTGCGGTGGAACTT---TTCAAATTATTGCGT 102356 |||||||| || ||| | ||| || ||||| || ||| ||| ||| | || Sbjct 10434 TCTCGTGATGAAGGATTACACTGCGACTTTGCC-TGC--CTTATGTTCCG-TTACTTAGT 10489 Query 102357 ATT-AAACCAACGACTGAGACTATTCATTCTATTGTTAAG-GAAGCCGTTGAGATTGAGA 102414 |||||||| | || | || ||| | | | | ||||| ||||| ||||| Sbjct 10490 CCAGAAACCAACAAAAGAAAGAAT-CATCGAAATTATCCGTGAAGCTGTTGAAATTGAAC 10548 Query 102415 AGGGATTCATATTGGATGCCCTTCCATGCGCTCTCATCGGTATGAATTCTGAAAAGATGT 102474 ||| |||| || |||||| | ||| | | | | || ||||||| || |||| Sbjct 10549 AGGAATTCTTAACAGATGCCTTACCAGTTGATATGCTTGGCATGAATTGCAAACTTATGT 10608 Query 102475 CCGAATATATTGAGTATGTATCTGATAGATTGTTGAAGCAGATCGGGGTGCCTCCAATTT 102534 | ||||||||||| | || |||| ||| | |||| | | || || | ||||| Sbjct 10609 CAGAATATATTGAATTCGTTGCTGACAGACTATTGATAGAATTGGGAGTCGGACGAATTT 10668 Query 102535 GGAACTCCAAGAATCCATTTGACTTCATGGAGAACATTAGCCTCGACGGGAAGACAAACT 102594 ||| | || |||||||| | |||||||| ||| || || || ||||| || | Sbjct 10669 ACAACACTAAAAATCCATTCAATTTCATGGAATCTATTTCACTAGAAGGCAAGACGAATT 10728 Query 102595 TCTTCGAAAAGAGGGTTGGGGACTAT 102620 |||||||||||| || || || ||| Sbjct 10729 TCTTCGAAAAGAAAGTCGGCGAATAT 10754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620115783825040