Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq71022 122 1e-22 >seq71022 Length=3779 Score = 122 bits (134), Expect = 1e-22 Identities = 666/1046 (64%), Gaps = 43/1046 (4%) Strand=Plus/Plus Query 109413 ATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAGAGTTT 109472 ||||||||| || ||||| | ||||| ||||| || | | || ||||| | ||||| Sbjct 818 ATAATACATTCCAGTTTTTAAACCAGATTTCCAGCCGAAAAAGTGAATTGAGGTTAGTTT 877 Query 109473 GGAA--AGTG---TCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATGAAT 109527 | | || |||| | ||| || ||| | ||||| ||||||||||||||| Sbjct 878 TCCATAATTGGGCTCGG---CGACATGAAT--GTTGAATGACTGGGACTGATCGATGAAT 932 Query 109528 CGACCACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAAT-TTCCCAGACAGTCTT 109586 || ||||| || ||||| | ||| |||||| | || |||||| || || || Sbjct 933 GCTCCTCGATCTGCAGCCATTTTTATGGC-CACTTTGACCGAAACTTCCCAAACGGTTTT 991 Query 109587 GTACAAATTCTTGA-TATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCACCAGCCT 109645 |||||| ||| || | ||| ||||| || | || |||||||| || || | Sbjct 992 GTACAA-TTCACGAATGTCAAATGGAATTTCTTCAATATTTTGAATGGAACCGTTATTGG 1050 Query 109646 TCACCATGAGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGTCAACAA 109705 || || || ||||| || | ||| | | || | | | ||| | || | Sbjct 1051 CCAAAATTTTATTTTTCATATCATCGTCCCATAAATCGCGTTCAGTTAAATCTTTAAGCA 1110 Query 109706 GATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCG 109765 ||| | ||||| || |||||||| | || ||||| ||||| ||| | | Sbjct 1111 AATGATGATTGACAACCTGGAATTCACCCGATAGGACACGTCGATTGTAGACGTTTGATG 1170 Query 109766 TGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCATGG 109825 |||| ||||| || | |||||||| || || ||||||||||| ||||| || ||||| | Sbjct 1171 TGTAAGGTTCAAATGATTCATTGTTTCCGAGAATTTGTGCAGTCGAAGCGGTTGGCATTG 1230 Query 109826 GAGCCATGAGAAGACTGTTTCGGAGACCC---TTCGTCTTTACCCGCTCACGCATTGCGT 109882 | |||| || || |||| || ||| || | || | ||| || | | | Sbjct 1231 GTGCCAAAAGTAGGGAATTTCTGATACCTGTTTTGGCAATTTTCTGCTT---CAATTCAT 1287 Query 109883 CCCAAT--CATAACGACCACTAAATTTAGTCTCACCATCCCACATATCTGGTTGAAGTAC 109940 |||||| ||||| | | | ||| | || |||||| || || | | Sbjct 1288 CCCAATTCCATAA--ATCTGTTGGTTTTTTGTC------CCACATGTCATACTGCAAAAT 1339 Query 109941 ACCCTCAGCAGCAGGAGAACCCTTGA-AACTCTCGTACGACCCCTCAACCTCGGCCAACT 109999 || | | | | || | | |||| | || |||| || | || |||| |||||||| | Sbjct 1340 GCCTTTACTAACTGG-GCAGCCTTCATAAGTCTCATAGGTGCCTTCAATTTCGGCCAATT 1398 Query 110000 CGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATGAGCATTCATGAGGC 110059 | | ||| || | || ||| ||| || ||||| ||||| || |||| | Sbjct 1399 CAGTACTAGCTTCCAAGGCACCATAATAAATCGTCTCGAAAATTTGTTGGTTCAATAATT 1458 Query 110060 GAGACTCTTCACAGTCG-AAGGGAAGACCACAAAGAATAAACACATCCGCTAGACCCTGA 110118 | | ||||| | ||| ||||| | || | || |||| |||| || | |||||| Sbjct 1459 GGGCTTCTTCGCTCTCGTAAGGGTAACGCATTAGGA-TAAATGCATCAGCCATGCCCTGA 1517 Query 110119 ACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCTACG---GGG 110175 || || | |||||||| ||||| |||| || || || ||| |||| | || Sbjct 1518 ACGCCAATTCCAATGGGACGATGTCTCATATTCGATGTTCTAGC---TTCTGGGATCGGA 1574 Query 110176 TAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTTCATGG 110235 ||||||||| || |||| ||| | ||| ||||| || || || |||| ||| | Sbjct 1575 TAAAAGTTGACATCAATGATTTTATTCAAATTTTTCGTTACGGTTTTTGTGACTTCTTTC 1634 Query 110236 AGTTTGTCGTAATCGAACGTTTTCGTCTCCTTATTGACATATTTGGGGAGAGCAATAGAC 110295 | ||| | | |||| |||||||| || ||| | ||| | | | ||||| || Sbjct 1635 AATTTCTTGAAATCAAACGTTTTT---TCATTAGTAACAAACATATTCAAGGCAATTGAG 1691 Query 110296 GCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTCCGTACACAAG 110355 || | ||| || || | | || ||||| | ||||| | ||| || ||||||||| Sbjct 1692 GCCAAATTACAGACGGCAACTTCATCTTTACTTGAATATTCGACAATCTCTGTACACAAG 1751 Query 110356 TTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCATCCTTA 110415 ||| | |||||| || | || | || || ||||| ||| || || || || Sbjct 1752 TTGCTGCATTTAATGGTTCCAATATTTTGTTGGTTAGATTTTCTGTTACAAGCGTCTTTG 1811 Query 110416 TAGAGCATGTATGGGGTACCAGTTTC 110441 |||||||| || || ||||| ||||| Sbjct 1812 TAGAGCATATAAGGCGTACCCGTTTC 1837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588381450814600