Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq75026 102 9e-17 >seq75026 Length=6543 Score = 102 bits (112), Expect = 9e-17 Identities = 176/251 (70%), Gaps = 6/251 (2%) Strand=Plus/Minus Query 153768 CAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCATGCTGCATTCTTTGCAACAACA 153827 ||||| |||| ||||| | || |||||||| ||||| || | ||||||||| | | Sbjct 6063 CAAAGACTTGGCGTTCCTTTAGGCTATGGAGGCCCTCACGCCGGTTTCTTTGCATGTAAA 6004 Query 153828 GACAAG--TATAAGAGAAAGATACCTGGCAGAATTGTAGGTC-AGTCAGTAGATAGTGAA 153884 | || | |||| || | || || | || | ||| | ||| ||||| || Sbjct 6003 CAAAACCTTGTAAGGCTAA--TGCCAGGTCGTATGATTGGTGTAACCAG-AGATATGGAT 5947 Query 153885 GGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGGAGAGACAAA 153944 || ||| | |||||||||||||| || || || |||||||| || || | ||||| ||| Sbjct 5946 GGAAATGATGCATACAGATTAGCCCTTCAAACAAGAGAGCAACACATTCGTAGAGATAAA 5887 Query 153945 GCAACCAGTAACATCTGCACAGCTCAGGCACTGCTGGCTAATATGTCTGGATTCTATGCA 154004 || || ||||| || || || ||||| || || ||||||||||||| | | | || ||| Sbjct 5886 GCCACTAGTAATATTTGTACTGCTCAAGCTTTGTTGGCTAATATGTCCGCAATGTACGCA 5827 Query 154005 GCATATCATGG 154015 || ||||| Sbjct 5826 ATTTACCATGG 5816 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578628106398880