Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq36344 138 3e-27 seq144 138 3e-27 seq25532 132 1e-25 seq31860 116 8e-21 >seq36344 Length=11671 Score = 138 bits (152), Expect = 3e-27 Identities = 151/198 (76%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTCGAGCTGCTTACC 195002 || || || || || || ||||| |||| |||| || | || |||||||| ||||| || Sbjct 872 GTTGATTCCTTCTGGATGTTGTAGTCGGACAAG-GTACGTCCGTCTTCGAGTTGCTTGCC 814 Query 195003 TGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTT 195062 || || || | |||||||||||||| || || |||||||||||||||||||| || Sbjct 813 AGCAAAAATCAAACGTTGTTGGTCTGGGGGGATTCCTTCTTTGTCTTGAATTTTAGCTTT 754 Query 195063 GACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGT 195122 || |||||||| ||||| || ||| ||||| | |||| || ||||| |||||||| Sbjct 753 TACATTCTCAATTGTGTCTGACGGTTCGACTTCCAATGTAATAGTTTTTCCAGTCAAAGT 694 Query 195123 TTTTACGAACACTTGCAT 195140 || ||||| | |||||| Sbjct 693 CTTGACGAATATTTGCAT 676 Score = 93.3 bits (102), Expect = 9e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||| || || ||||||||||||||||| || | | ||| | |||||||| | || Sbjct 651 GTGAAGCGTAGATTCTTTTTGAATATTGTAGTCAGACAAAGTACGGCCATCTTCTAATTG 592 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || || ||||| || | || ||||| ||||| ||||| ||||| || || || || || Sbjct 591 TTTTCCGGCGAAAATCAAACGCTGTTGATCTGGTGGAATACCTTCCTTATCCTGGATCTT 532 Query 195057 TTGCTTGACGTTCTCAATGGT 195077 ||| || || |||||||| Sbjct 531 GGCCTTTACATTTTCAATGGT 511 >seq144 Length=14776 Score = 138 bits (152), Expect = 3e-27 Identities = 145/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 194950 TCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAG 195009 ||||||||||| ||||| || | || || | || ||||| | ||||| || ||||| Sbjct 7512 TCTTTTTGAATGTTGTAGTCAGATAGGGTACGTCCGTCTTCCAATTGCTTTCCAGCGAAA 7571 Query 195010 ATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTC 195069 || || |||||||| ||||||||||| ||||| || |||||||| || ||| || ||| Sbjct 7572 ATGAGGCGTTGTTGATCTGGAGGAATTCCTTCCTTATCTTGAATCTTGGCCTTAACATTC 7631 Query 195070 TCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACG 195129 ||||||| || |||| ||| ||||| | ||| | || || || ||||| ||||| || Sbjct 7632 TCAATGGAATCAGAACCTTCAACTTCTAAGGTTATGGTTTTACCGGTCAATGTTTTGACA 7691 Query 195130 AACACTTGCAT 195140 || | |||||| Sbjct 7692 AAGATTTGCAT 7702 Score = 138 bits (152), Expect = 3e-27 Identities = 151/198 (76%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTCGAGCTGCTTACC 195002 || ||||| |||||||| ||||| || | |||| || | |||||||| | ||||| || Sbjct 13738 GTCGACTCCTTTTGAATGTTGTAGTCTGACAAG-GTACGTCCATCTTCCAATTGCTTTCC 13680 Query 195003 TGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTT 195062 ||||| || || |||||||| ||||||||||| |||||||||||||| || || ||| Sbjct 13679 AGCGAAAATGAGACGTTGTTGATCTGGAGGAATACCTTCTTTGTCTTGGATCTTGGCCTT 13620 Query 195063 GACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGT 195122 ||||| ||||| || ||||| || ||||| | || | || ||||||||||| || Sbjct 13619 AACGTTTTCAATAGTATCCGAGGGCTCGACTTCCAAAGTGATGGTTTTTCCTGTCAATGT 13560 Query 195123 TTTTACGAACACTTGCAT 195140 ||| || || | ||||| Sbjct 13559 TTTAACAAAAATCTGCAT 13542 Score = 134 bits (148), Expect = 3e-26 Identities = 148/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 || ||||| |||||||||||||| |||| | ||| | |||||||| | || ||||| Sbjct 14650 GTCGACTCCTTTTGAATATTGTAGTCGGACAAAGTGCGGCCATCTTCCAATTGTTTACCG 14591 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 ||||| || | || || || ||||||||||| ||||||||||| || || || ||| Sbjct 14590 GCGAAAATCAAACGCTGCTGATCTGGAGGAATACCTTCTTTGTCCTGGATCTTGGCCTTA 14531 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 ||||| |||||||| || || || ||||| | ||| | || || || ||||||||| Sbjct 14530 ACGTTTTCAATGGTATCTGAGGGCTCAACTTCCAAGGTGATAGTTTTGCCAGTCAAAGTT 14471 Query 195124 TTTACGAACACTTGCAT 195140 || ||||| | ||||| Sbjct 14470 TTAACGAAAATCTGCAT 14454 Score = 132 bits (146), Expect = 1e-25 Identities = 148/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 194943 AGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACC 195002 ||| |||||||| ||||| ||||| || | | ||| | |||||||| | || || || Sbjct 13511 AGTAGACTCTTTCTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAATTGTTTTCC 13452 Query 195003 TGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTT 195062 ||||| || | || || || ||||||||||| |||||||||||||| || || || Sbjct 13451 AGCGAAAATCAAACGCTGCTGATCTGGAGGAATACCTTCTTTGTCTTGGATCTTAGCTTT 13392 Query 195063 GACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGT 195122 ||||| ||||| || |||||| ||| ||||| | || | ||| ||||| || || || Sbjct 13391 CACGTTTTCAATAGTATCCGAAGGTTCGACTTCCAATGTGATCGTTTTTCCGGTTAAGGT 13332 Query 195123 TTTTACGAACACTTGCAT 195140 ||| ||||| | |||||| Sbjct 13331 TTTGACGAAAATTTGCAT 13314 Score = 131 bits (144), Expect = 4e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 || ||||||||||| |||||||| || | | || | |||||||| | ||||| || Sbjct 14194 GTCGACTCTTTTTGGATATTGTAGTCAGACAATGTGCGGCCATCTTCCAATTGCTTTCCA 14135 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 ||||| || | || ||||| |||||||| |||||||| || ||||||||||| ||| Sbjct 14134 GCGAAAATCAAACGCTGTTGATCTGGAGGGATGCCTTCCTTATCTTGAATTTTAGCCTTT 14075 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 || || |||||||| ||||| || ||||| | ||| | || || || || || ||| Sbjct 14074 ACATTTTCAATGGTATCCGAGGGCTCGACTTCCAAGGTGATGGTTTTGCCAGTTAAGGTT 14015 Query 195124 TTTACGAACACTTGCAT 195140 || ||||| | |||||| Sbjct 14014 TTCACGAAGATTTGCAT 13998 Score = 125 bits (138), Expect = 2e-23 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || || || |||||||||||||||||||||| || || |||||||| | || Sbjct 10750 GTGTAGCGTCGATTCTTTTTGAATATTGTAATCGGATAGGGTATGTCCATCTTCCAATTG 10691 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || ||||| || || |||||||| ||||| || || ||||| || |||||||| || Sbjct 10690 CTTTCCAGCGAAAATGAGGCGTTGTTGATCTGGTGGGATTCCTTCCTTATCTTGAATCTT 10631 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 || | || ||||||| || || | ||| ||||| | || | || || || || Sbjct 10630 GGTTTTAATATTTTCAATGGAATCAGACCCTTCAACTTCTAAAGTTATGGTTTTACCGGT 10571 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 ||| ||||| || || | |||||| Sbjct 10570 CAATGTTTTGACAAAGATTTGCAT 10547 Score = 122 bits (134), Expect = 2e-22 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 || |||||||| ||||| || ||||| | || || | |||||||| | || || || Sbjct 13170 GTCGACTCTTTCTGAATGTTATAATCTGACAGGGTACGTCCATCTTCCAATTGTTTTCCA 13111 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 || ||||| | ||||| || ||||| || || ||||| || |||||||| || || Sbjct 13110 GCAAAGATCAAACGTTGCTGATCTGGGGGGATACCTTCCTTATCTTGAATCTTGGCTTTA 13051 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 ||||| ||||||||||| ||| || || || | |||| |||||||| ||||| || Sbjct 13050 ACGTTTTCAATGGTGTCGGAAGGCTCAACCTCCAATGTAATGGTCTTTCCAGTCAACGTC 12991 Query 195124 TTTACGAACACTTGCAT 195140 || ||||| | |||||| Sbjct 12990 TTGACGAAAATTTGCAT 12974 Score = 109 bits (120), Expect = 1e-18 Identities = 145/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTCGAGCTGCTTACC 195002 || |||||||| ||||||||||| |||| |||| || | || ||||| | |||||| || Sbjct 12942 GTAGACTCTTTCTGAATATTGTAGTCGGACAAG-GTACGTCCGTCTTCCAACTGCTTTCC 12884 Query 195003 TGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTT 195062 || ||||| | || || |||||||| ||||| ||||| || || || || || ||| Sbjct 12883 AGCAAAGATCAAACGCTGCTGGTCTGGTGGAATACCTTCCTTATCCTGGATCTTAGCCTT 12824 Query 195063 GACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGT 195122 |||||||| || || || || || || || | || | ||||| || ||||| || Sbjct 12823 TACGTTCTCGATCGTATCAGATGGCTCGACCTCCAAAGTGATGGTCTTACCAGTCAATGT 12764 Query 195123 TTTTACGAACACTTGCATT 195141 || ||||| | |||||| Sbjct 12763 CTTGACGAATATCTGCATT 12745 Score = 104 bits (114), Expect = 5e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 || ||||| ||||| |||||||| || | | || | |||||||| | || || || Sbjct 14422 GTCGACTCCTTTTGGATATTGTAGTCTGACAATGTACGGCCATCTTCTAATTGTTTGCCG 14363 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 || || || | || ||||| |||||||| || ||||| || ||||||||||| || Sbjct 14362 GCAAAAATCAAACGCTGTTGATCTGGAGGGATACCTTCCTTATCTTGAATTTTAGCTTTA 14303 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 || || || || |||||||| || ||||| | ||| | || || || || || ||| Sbjct 14302 ACATTTTCGATTGTGTCCGAGGGCTCGACTTCCAAGGTGATGGTTTTGCCAGTTAAGGTT 14243 Query 195124 TTTACGAACACTTGCAT 195140 || ||||| | |||||| Sbjct 14242 TTCACGAAGATTTGCAT 14226 >seq25532 Length=5913 Score = 132 bits (146), Expect = 1e-25 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 194925 TCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCC 194984 ||| | ||| | ||| | || |||||||| || ||||||||||| | | || || | Sbjct 929 TCTGAGAACCAAGTGCAATGTAGACTCTTTCTGGATATTGTAATCACCCAATGTCCTAGC 988 Query 194985 ATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTT 195044 ||||| | || || || || || || | || |||||| ||||| || ||||||||||| Sbjct 989 GTCTTCCAATTGTTTGCCAGCAAAAATCAATCTTTGTTGATCTGGTGGGATGCCTTCTTT 1048 Query 195045 GTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAAC 195104 || |||||||| |||||| | ||||| ||||| | || |||||||| || | Sbjct 1049 ATCCTGAATTTTACCCTTGACACTTTCAATCGTGTCGGCTGCCTCAACTTCAAGCGTTAT 1108 Query 195105 CGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||||||||||||| ||||| ||||| | |||||| Sbjct 1109 TGTCTTTCCTGTCAATGTTTTAACGAAAATTTGCAT 1144 >seq31860 Length=14314 Score = 116 bits (128), Expect = 8e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 ||||||||||||||||| ||||| ||| ||| ||| | |||||||| | || || || Sbjct 1258 GTGGACTCTTTTTGAATGTTGTAGTCGCTAAGTGTTTTGCCATCTTCCAATTGTTTGCCA 1199 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 || || || | || ||| || ||||| || ||||||||||| || ||||| || ||| Sbjct 1198 GCAAAAATCAATCTTTGCTGATCTGGTGGGATGCCTTCTTTATCCTGAATCTTCAATTTG 1139 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 || || ||||| | || || | || ||||||| || | || ||||| || | ||| Sbjct 1138 ACATTTTCAATAGAATCTGAGCCCTCAGCTTCAAGTGTTATTGTTTTTCCGGTTAGGGTT 1079 Query 195124 TTTACGAACACTTGCAT 195140 || | ||| | |||||| Sbjct 1078 TTAATGAATATTTGCAT 1062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1108333620428619