Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq144 98.7 6e-16 >seq144 Length=14776 Score = 98.7 bits (108), Expect = 6e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 ||||| || | ||| ||||||||||||||||| || || ||| | ||| |||| ||| Sbjct 13182 ACCAAATGCAATGTCGACTCTTTCTGAATGTTATAATCTGACAGGGTACGTCCATCTTCC 13123 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 | |||||||| ||||| || | |||||||| ||| | || | || ||||| || | Sbjct 13122 AATTGTTTTCCAGCAAAGATCAAACGTTGCTGATCTGGGGGGATACCTTCCTTATCTTGA 13063 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| ||| ||| | | || | || | |||||| || | || ||||| ||| Sbjct 13062 ATCTTGGCTTTAACGTTTTCAATGGTGTCGGAAGGCTCAACCTCCAATGTAATGGTCTTT 13003 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || | ||||| || || || ||||| Sbjct 13002 CCAGTCAACGTCTTGACGAAAATTTGCAT 12974 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/195 (71%), Gaps = 4/195 (2%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 |||||| |||||||| ||||| || ||| | ||| | || |||| || ||||| || || Sbjct 7511 TTCTTTTTGAATGTTGTAGTCAGATAGGGTACGTCCGTCTTCCAATTGCTTTCCAGCGAA 7570 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || ||||| || ||| | || | || ||||| || |||||| || || | Sbjct 7571 AATGAGGCGTTGTTGATCTGGAGGAATTCCTTCCTTATCTTGAATCTTGGCCTTAAC--A 7628 Query 34910 TGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTC 34967 | || || || ||| | ||||| || | |||||||||||| || || | || || Sbjct 7629 TTCTCAATGGAATCAGAACCTTCAACTTCTAAGGTTATGGTTTTACCGGTCAATGTTTTG 7688 Query 34968 ACAAAGATCTGCATA 34982 |||||||| |||||| Sbjct 7689 ACAAAGATTTGCATA 7703 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || || ||||| | | |||||||| | || |||||| ||||| || || || || Sbjct 10773 CCACCTCTCAAGCGTAGGACCAAGTGTAGCGTCGATTCTTTTTGAATATTGTAATCGGAT 10714 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | || |||| |||| || ||||| || || || || ||||| || ||| | || Sbjct 10713 AGGGTATGTCCATCTTCCAATTGCTTTCCAGCGAAAATGAGGCGTTGTTGATCTGGTGGG 10654 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || ||||| || |||||| ||| | | | || || ||| | ||||| Sbjct 10653 ATTCCTTCCTTATCTTGAATCTTGGTTTTAATATTTTCAATGGAATCAGACCCTTCAACT 10594 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || | ||||||||||| || || | || || |||||||| |||||| Sbjct 10593 TCTAAAGTTATGGTTTTACCGGTCAATGTTTTGACAAAGATTTGCATA 10546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324314087190696