Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq71022 405 6e-108 seq1270 194 2e-44 >seq71022 Length=3779 Score = 405 bits (448), Expect = 6e-108 Identities = 1226/1890 (65%), Gaps = 37/1890 (2%) Strand=Plus/Plus Query 46967 TTTGTCTTTTTCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATA 47026 |||||||| | | || ||||| | ||| | |||| |||| ||||||||| |||||||| Sbjct 765 TTTGTCTTAT-CGACGGTAAATTGAATGGCATTAACGGCTGGTTTTGTTCGCAAATAATA 823 Query 47027 CATACCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATA 47086 ||| ||||| |||||||| | |||| || | || || || |||| ||| ||| Sbjct 824 CATTCCAGTTTTTAAACCAGATTTCCAGCCGAAAAAGTGAATTGAGGTTAGTTTTCCATA 883 Query 47087 ACTAGGTTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATC 47146 | | || || | | |||||| || | || || |||||| || ||||| |||| ||| Sbjct 884 ATTGGGCTCGGCGACATGAATGTTGAATGACTGGGACTGATCGATGAATGCTCCTCGATC 943 Query 47147 AGCTGCCATATCTAAAATAACC-CTTTGTG-GTATCT-CCCATACTGTTTTATAAATTTG 47203 || ||||| | || | || ||||| | | || |||| || ||||| || | || Sbjct 944 TGCAGCCATTTTTA---TGGCCACTTTGACCGAAACTTCCCAAACGGTTTTGTACAATTC 1000 Query 47204 TTTAATGTCTTCTGGGAGATT---AGTATTTTGAATAGATCCTCCgttttctataatttt 47260 |||||| ||| | | | |||||||||| || || || | | |||||| Sbjct 1001 ACGAATGTCAAATGGAATTTCTTCAATATTTTGAATGGAACCGTTATTGGCCAAAATTTT 1060 Query 47261 gttttttaattcatttgaccaaagttttcgttcagttaatgtttttaaAAGATGAGGATT 47320 ||||| | |||| ||| | | ||||||||||| ||| | | |||| |||| Sbjct 1061 ATTTTTCATATCATCGTCCCATAAATCGCGTTCAGTTAAATCTTTAAGCAAATGATGATT 1120 Query 47321 AACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTC 47380 |||| || ||||| || ||||| || | || | || | || ||| || ||||| Sbjct 1121 GACAACCTGGAATTCACCCGATAGGACACGTCGATTGTAGACGTTTGATGTGTAAGGTTC 1180 Query 47381 TATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAA 47440 | |||||||| ||||| | |||||| ||||| || || || ||||| | ||| | | Sbjct 1181 AAATGATTCATTGTTTCCGAGAATTTGTGCAGTCGAAGCGGTTGGCATTGGTGCCAAAAG 1240 Query 47441 TAAGCTATTTCTTACTCCATATTTTTGTA-TCTNNNNNNNNNNNNGTTTCCAATCCCAAA 47499 || | |||||| | || | |||| | | | | | ||||| ||| | Sbjct 1241 TAGGGAATTTCTGATACC-TGTTTTGGCAATTTTCTGCTTCAATTCATCCCAATTCCATA 1299 Query 47500 GATCTGATGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAAC 47559 ||||| ||| | ||| | ||||| || | ||| |||||||| | || | | Sbjct 1300 AATCTGTTGGTTTTTTGTCCCACATGTCATACTGCAAAATGCCTTTACTAACTGGGCAGC 1359 Query 47560 CATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATGCAC 47619 | | ||| || | ||| | || | | || || | |||| ||| |||||||| |||| Sbjct 1360 CTTCATAAGTCTCATAGGTGCCTTCAATTTCGGCCAATTCAGTACTAGCTTCCAAGGCAC 1419 Query 47620 TATAATATATTGTTTCAAATATTTTTATGTTTAGATTCCTTG-CTTCTGATGATTCAAAA 47678 |||||| || || || || |||| | ||| | || | | ||||| || || Sbjct 1420 CATAATAAATCGTCTCGAAAATTTGTTGGTTCA-ATAATTGGGCTTCTTCGCTCTCGTAA 1478 Query 47679 GGATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTA 47738 || || |||| ||| |||| || ||||| ||||| ||||| || | | Sbjct 1479 GGGTAACGCATTAGGATAAATGCATCAGCCATGCCCTGAACGCCAATTCCAATGGGACGA 1538 Query 47739 TGAGTTTTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTTA 47798 || | |||| || ||||||||| | ||||| ||| | ||| || |||||| Sbjct 1539 TGTCTCATATTCGATGTTCTAGCTTCTGGGATCGGATAAAAGTTGACATCAATGATTTTA 1598 Query 47799 TTTAGANNNNNNNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAAATCAAACTTGTTA 47858 || | | | |||| | ||||| || ||||||||| | || Sbjct 1599 TTCAAATTTTTCGTTACGGTTTTTGTGACTTCTTTCAATTTCTTGAAATCAAACGTTTTT 1658 Query 47859 T--TTA-TAACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTT 47915 | ||| |||||||| |||| | || || || || | |||||| || || || |||| | Sbjct 1659 TCATTAGTAACAAACATATTCAAGGCAATTGAGGCCAAATTACAGACGGCAACTTCATCT 1718 Query 47916 GGATTAGTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTT 47975 | | | ||||| | || || | ||| | || | ||||| || || || | |||| Sbjct 1719 TTACTTGAATATTCGACAATCTCTGTACACAAGTTGCTGCATTTAATGGTTCCAATATTT 1778 Query 47976 TGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCT 48035 || || ||| ||||||| ||||| ||||| |||||| |||| || || ||||| Sbjct 1779 TGTTGGTTAGATTTTCTGTTACAAGCGTCTTTGTAGAGCATATAAGGCGTACCCGTTTCA 1838 Query 48036 ATCTGAGATTCAATGATAGATTTCCAAACAGTCCTA-GCCTTTAT------AACAGCTCT 48088 | ||||||||||| || | ||| | ||||| ||||| || || | | Sbjct 1839 ACTTGAGATTCAATAATGGCAAACCAGAG-GTCCTGTGCCTTAATCTGGCGAATAAAACG 1897 Query 48089 AGCTTTATTATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATT 48148 | ||| || |||| || || || || || || ||||| || || || | | Sbjct 1898 ACCTTCTTTTTCATATT-GT-----GTGTACAATTTTTCAAACTCCTCACCCCATGTGTC 1951 Query 48149 ATCTAACCCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCT 48208 | || ||||| || |||| ||| |||||||| ||| |||| | | || || Sbjct 1952 GTGTAGACCAGGGCACTCATGAGGGCACATCAAACTCCACATTTCATTAGACTCGACCCT 2011 Query 48209 AGTCATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTC 48268 |||||| | |||||| |||||||| || | ||||||||| | || ||| |||||| Sbjct 2012 TTGCATAAACAAATCTGGGATCCAAAGGGCGAAAAATAAATCACGAGCCCTTCCTTCTTC 2071 Query 48269 ATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAA 48328 ||||| |||| | || | || || || || | | || | ||||| ||||| | Sbjct 2072 CTTGCCCGTATTTTTCTTCAAGTCTAGGAACTCGAAAACGTCCCCGTGCCAAGGTTCAAG 2131 Query 48329 ATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATT 48388 ||| || || | | || |||| |||||||| || || || | || | || ||||| Sbjct 2132 ATAAATGGCAAAAGCGCCAGGTCTCTTATTACCACCCTGGTCCACGTAACGAGCCGTATT 2191 Query 48389 GTTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATA 48448 ||| || |||| |||||||| || | |||||||| || || || || || | ||||| Sbjct 2192 GTTGTACACTCGCAACATTGGTACTAGGCCATTTGAAATGCCGTTAGTACCGGCGATATA 2251 Query 48449 ACTTCCACTAGCTCTTATA---TTACTAATTGAAATACCTATACCACCTGCCATTTTAGA 48505 | |||| | || | ||| | | | || | || || || ||||| |||||| Sbjct 2252 AGTTCCCTTGGCCCGAATACAGTGAACATTT---AGGCCAATTCCGCCTGCAGATTTAGA 2308 Query 48506 TATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATT 48565 || ||| |||||| | || | |||||| ||||| || || ||||||||||| |||| | Sbjct 2309 TACTAGCGCACACTGCTTCAAGGTATCGTAAATGCCCTCAATACTATCATCACTCATCGT 2368 Query 48566 TAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGA 48625 |||| || ||| |||| || ||| || || | | ||| ||||| || || Sbjct 2369 CAATAAGAAGCAAGATGACAACTGAGGACGAGGGGTGGCCGCTGCAAACAATGTAGGCGA 2428 Query 48626 TGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATC 48685 |||||| | || | || || |||| ||||| || ||||| |||| || || || Sbjct 2429 CGCATGAGTGAAATAACGTTCAGACAACAGGTTATACGTCTCAATGGCAGAGTCAATGTC 2488 Query 48686 CCATTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTT 48745 | ||| || |||| || ||| | ||| ||||||| || || | || |||| ||| Sbjct 2489 CTCCCCATGAATGCCTACAGCTACTCTCATCAACATATGCTGTGGACGCTCCACAACTTT 2548 Query 48746 GTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTATGA 48805 || || ||||| | ||| ||| |||||| ||||| || || ||||| ||||| Sbjct 2549 CCCCTTAATCTTCAACAAATAAGATCGTTCCAAGGTTTTGAAGCCGAAATAATTGTAGCC 2608 Query 48806 AAAGTCGTTATCATTAATAATTGATGAATT 48835 ||| || ||| | ||| || | ||||| Sbjct 2609 AAAATCACGATCGTAAATGATGGCCGAATT 2638 >seq1270 Length=21014 Score = 194 bits (214), Expect = 2e-44 Identities = 368/540 (68%), Gaps = 4/540 (1%) Strand=Plus/Minus Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 || ||||||||| | ||| | ||||| |||||||| || || || |||| ||| ||| || Sbjct 10759 TTCTGATATTCGCCGACTTTCTTTTCGAAGAAATTCGTCTTGCCTTCTAGTGAAATAGAT 10700 Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGT 18789 ||||| |||| ||||||||||| || || ||| | || ||| ||||||| | | Sbjct 10699 TCCATGAAATTGAATGGATTTTTAGTGTTGTAAATTCGTCCGACTCCCAATTCTATCAAT 10640 Query 18790 AGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAAT 18849 ||||| || || || |||| ||||||| ||| | | |||||||| || | | Sbjct 10639 AGTCTGTCAGCAACGAATTCAATATATTCTGACATAAGTTTGCAATTCATGCCAAGCATA 10580 Query 18850 TTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATA 18909 | ||| |||| |||||||| | ||||| ||||| || | || || || ||||| Sbjct 10579 TCAACTGGTAAGGCATCTGTTAAGAATTCCTGTTCAATTTCAACAGCTTCACGGATAATT 10520 Query 18910 GATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTA--AACATCAAACATGCAA 18967 | | ||| |||| | || | | || | || ||||| | || |||| Sbjct 10519 TCGATGATTCTTTCTTTTGTTGGTT--TCTGGACTAAGTAACGGAACATAAGGCAGGCAA 10462 Query 18968 AATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCA 19027 | || || |||| ||| || || | | || | ||| || || ||||| | |||||||| Sbjct 10461 AGTCGCAGTGTAATCCTTCATCACGAGAAATGAGTTCGTTTGAGAATGTCAGACCAGGCA 10402 Query 19028 TCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTT 19087 | || || | ||| || | |||||| || |||||||| ||| ||||| || |||| Sbjct 10401 TAAGGCCACGTTTCTTAAGCCAGAAAATGGAAGCAAAACTTCCGCTGAAGAAAATTCCTT 10342 Query 19088 CTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATT 19147 | || || ||||| || | | | |||||| ||| | || | | | | ||||||| Sbjct 10341 CGACGGCAGCAAATGCTATAATGCGTTCTCCGTAATTGGCGTTCTGACTGCATATCCATT 10282 Query 19148 TCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGAT 19207 | |||||||| ||||||||||| |||||||| | ||||| | | ||| ||||||| Sbjct 10281 GAATAGCCCAATCGGCCTTCTTTTTGACACATGGAAGGGTCTCAACTGCATTGAATAGAT 10222 Score = 91.5 bits (100), Expect = 2e-13 Identities = 133/187 (71%), Gaps = 1/187 (1%) Strand=Plus/Minus Query 19307 TTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTC 19366 |||||| || | ||| ||||| | ||| | ||| |||||||| || ||||| || | Sbjct 7300 TTGCTTTAGT-ACCTGAACTTCCTGGCTAAAACGTTCAACCAAATTCTCGTTAACAATGC 7242 Query 19367 CATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTA 19426 | || ||||||||||| || || || || ||| ||||| ||||| || | | Sbjct 7241 CGTCTGATGCTGCAAAAAAGGCCAAAACGTGAGAAATGAAATGCCTTTCACTTGGCTTCA 7182 Query 19427 ATGTATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAG 19486 |||| | ||| || || ||||||||||| | || || |||||||| ||||| || || | Sbjct 7181 ATGTTTCCCAGTCTTTCATATCTTTAGAAAGGTCGACCTCTTCAACGGTCCAGAACGAGG 7122 Query 19487 CCTCTGC 19493 | || || Sbjct 7121 CTTCAGC 7115 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 19221 TGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTAT 19280 || |||| | ||||||| || || | |||||||||||||||||||| | ||| || || Sbjct 7476 TGCATCTCTTACATATGTGTCGATTAGCAAACTGTACATTTCTGAATGCACATTCTCCAT 7417 Query 19281 AGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGT 19316 || || || ||||| || |||||||||||||| || Sbjct 7416 TGCAATTTGGAATCCATAGAAACATCTTGCTTCAGT 7381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561541372245480