Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq1270 123 3e-23 >seq1270 Length=21014 Score = 123 bits (136), Expect = 3e-23 Identities = 354/539 (66%), Gaps = 4/539 (1%) Strand=Plus/Minus Query 36885 TTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTCTAGTGATATATTT 36944 || |||||||| || ||| ||||||| ||||| ||||| ||||||||||| ||| | Sbjct 10759 TTCTGATATTCGCCGACTTTCTTTTCGAAGAAATTCGTCTTGCCTTCTAGTGAAATAGAT 10700 Query 36945 TCCATAAAATCAAATGGATTAGATGTATTATATA-TAGTACTACATGATAATTCCTTCAG 37003 ||||| |||| |||||||| || || || | | || | || | ||||| ||| Sbjct 10699 TCCATGAAATTGAATGGATTTTTAGTGTTGTAAATTCGTCCGAC-TCCCAATTCTATCAA 10641 Query 37004 AAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTTTATACCAATTAG 37063 || || || ||||| ||||| || |||| |||| |||| | || || |||| | Sbjct 10640 TAGTCTGTCAGCAACGAATTCAATATATTCTGACATAAGTTTGCAATTCATGCCAAGCAT 10581 Query 37064 TTTTACTGGAATTGCATCT-TGAAGAAATAGTTTTTCTATTATTACAGCATCTTTAACTA 37122 | ||||| | |||||| | ||| ||| | ||| ||| ||||| || | | Sbjct 10580 ATCAACTGGTAAGGCATCTGTTAAG-AATTCCTGTTCAATTTCAACAGCTTCACGGATAA 10522 Query 37123 TATTAACAATAACTTCTTCAGTTGGGGGATATTTTAAATATTTAAACAATAAACATGCAA 37182 | | | || ||||| ||||| | ||| || |||| | || |||| Sbjct 10521 TTTCGATGATTCTTTCTTTTGTTGGTTTCTGGACTAAGTAACGGAACATAAGGCAGGCAA 10462 Query 37183 AATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCA 37242 | || || ||||| |||||||| | | || | ||| || || || || | || |||| Sbjct 10461 AGTCGCAGTGTAATCCTTCATCACGAGAAATGAGTTCGTTTGAGAATGTCAGACCAGGCA 10402 Query 37243 TTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTT 37302 | | || | ||| |||| ||| || || | |||||| ||| |||||||| |||| Sbjct 10401 TAAGGCCACGTTTCTTAAGCCAGAAAATGGAAGCAAAACTTCCGCTGAAGAAAATTCCTT 10342 Query 37303 CAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCAGAAATCCAtt 37362 | || || |||||||||| || ||| ||| || | | | | | | ||||||| Sbjct 10341 CGACGGCAGCAAATGCTATAATGCGTTCTCCGTAATTGGCGTTCTGACTGCATATCCATT 10282 Query 37363 tttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTTTTAAGAGA 37421 | | |||||| ||||| ||| |||||| || || |||| ||| || || ||| Sbjct 10281 GAATAGCCCAATCGGCCTTCTTTTTGACACATGGAAGGGTCTCAACTGCATTGAATAGA 10223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 591718878402280