Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq144 98.7 8e-16 >seq144 Length=14776 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| |||||||| |||||||||||||||||||| ||||| | | | || ||| Sbjct 10755 ACCAAGTGTAGCGTCGATTCTTTTTGAATATTGTAATCGGATAGGGTATGTCCATCTTCC 10696 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 || ||||| || || || || || || |||||||| | || | || ||||| || | Sbjct 10695 AATTGCTTTCCAGCGAAAATGAGGCGTTGTTGATCTGGTGGGATTCCTTCCTTATCTTGA 10636 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| ||| | | | | || || ||| | || || || | || || ||||| Sbjct 10635 ATCTTGGTTTTAATATTTTCAATGGAATCAGACCCTTCAACTTCTAAAGTTATGGTTTTA 10576 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| ||||| ||||| || ||||| Sbjct 10575 CCGGTCAATGTTTTGACAAAGATTTGCAT 10547 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||||||| | || ||| |||||||||||||| || || | | | || | || ||| Sbjct 14662 ACCAAATGCAATGTCGACTCCTTTTGAATATTGTAGTCGGACAAAGTGCGGCCATCTTCC 14603 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 || || |||||||| || |||| ||||| ||||| | |||| || || ||||| Sbjct 14602 AATTGTTTACCGGCGAAAATCAAACGCTGCTGATCTGGAGGAATACCTTCTTTGTCCTGG 14543 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| || || | | | ||||| | ||| || |||| || || ||||| Sbjct 14542 ATCTTGGCCTTAACGTTTTCAATGGTATCTGAGGGCTCAACTTCCAAGGTGATAGTTTTG 14483 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||||||||| || ||||||||||| Sbjct 14482 CCAGTCAAAGTTTTAACGAAAATCTGCAT 14454 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 ||||||||||| ||||| |||||||| | || |||| ||||| ||||| || || || Sbjct 7512 TCTTTTTGAATGTTGTAGTCAGATAGGGTACGTCCGTCTTCCAATTGCTTTCCAGCGAAA 7571 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || || || |||||||| | |||| || ||||| || |||||| || ||| Sbjct 7572 ATGAGGCGTTGTTGATCTGGAGGAATTCCTTCCTTATCTTGAATCTTGGCCTTAACATTC 7631 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | || || || | || || || | || || ||||| || ||||| ||||| ||| Sbjct 7632 TCAATGGAATCAGAACCTTCAACTTCTAAGGTTATGGTTTTACCGGTCAATGTTTTGACA 7691 Query 48756 AAAATCTGCAT 48766 || || ||||| Sbjct 7692 AAGATTTGCAT 7702 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||||||| | || ||| |||||||| ||||| || || | | || | || ||| Sbjct 13750 ACCAAATGCAATGTCGACTCCTTTTGAATGTTGTAGTCTGACAAGGTACGTCCATCTTCC 13691 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 || ||||| || || || || || || |||||||| | |||| || || ||||| Sbjct 13690 AATTGCTTTCCAGCGAAAATGAGACGTTGTTGATCTGGAGGAATACCTTCTTTGTCTTGG 13631 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| || || | | || || || | ||| || |||| || || |||||| Sbjct 13630 ATCTTGGCCTTAACGTTTTCAATAGTATCCGAGGGCTCGACTTCCAAAGTGATGGTTTTT 13571 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| ||||| |||||||||||||| Sbjct 13570 CCTGTCAATGTTTTAACAAAAATCTGCAT 13542 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||||||| | || |||||| ||||||||||| || || | | || |||| ||| Sbjct 12954 ACCAAATGCAATGTAGACTCTTTCTGAATATTGTAGTCGGACAAGGTACGTCCGTCTTCC 12895 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 |||||||| || ||||| |||| ||||| || || | |||| || ||||| || Sbjct 12894 AACTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCTGGTGGAATACCTTCCTTATCCTGG 12835 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| ||||| | | | || || | ||| ||||||| || || || || Sbjct 12834 ATCTTAGCCTTTACGTTCTCGATCGTATCAGATGGCTCGACCTCCAAAGTGATGGTCTTA 12775 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || || || || |||||||| Sbjct 12774 CCAGTCAATGTCTTGACGAATATCTGCAT 12746 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||||||| | || |||||| ||||| ||||| ||||| | | | || | || ||| Sbjct 13522 ACCAAATGCAAAGTAGACTCTTTCTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCC 13463 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 || || || || || || |||| ||||| ||||| | |||| || || ||||| Sbjct 13462 AATTGTTTTCCAGCGAAAATCAAACGCTGCTGATCTGGAGGAATACCTTCTTTGTCTTGG 13403 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| ||| || | | || || || | || || |||| || ||||||||| Sbjct 13402 ATCTTAGCTTTCACGTTTTCAATAGTATCCGAAGGTTCGACTTCCAATGTGATCGTTTTT 13343 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || ||||| || ||||| ||||| Sbjct 13342 CCGGTTAAGGTTTTGACGAAAATTTGCAT 13314 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||||||| | || ||||||||| |||||||| ||||| | | || | || ||| Sbjct 14206 ACCAAATGCAATGTCGACTCTTTTTGGATATTGTAGTCAGACAATGTGCGGCCATCTTCC 14147 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 || ||||| || || || |||| ||||||||||| | || | ||| ||||| || | Sbjct 14146 AATTGCTTTCCAGCGAAAATCAAACGCTGTTGATCTGGAGGGATGCCTTCCTTATCTTGA 14087 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 || || |||||| | | | || || | ||| || |||| || || ||||| Sbjct 14086 ATTTTAGCCTTTACATTTTCAATGGTATCCGAGGGCTCGACTTCCAAGGTGATGGTTTTG 14027 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || ||||| || || || ||||| Sbjct 14026 CCAGTTAAGGTTTTCACGAAGATTTGCAT 13998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380562671333511