Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= NC_019541.1 Length=45364 Score E Sequences producing significant alignments: (Bits) Value seq17833 145 2e-30 >seq17833 Length=32105 Score = 145 bits (160), Expect = 2e-30 Identities = 172/233 (74%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 28028 ACTGCTCGACTAACTGAAACAGTATCAAAAGCAGTTGCGATCAGTGGTGCAAGCGCAGAA 28087 ||||| ||| |||||||| || || ||||| |||||| | ||||| | |||||| Sbjct 11701 ACTGCAAAACTTACTGAAACCGTGTCGAAAGCCGTTGCGGTATCGGGTGCTACAGCAGAA 11760 Query 28088 GCTGCTGATGCAGCTTTAGTACAATTTGGGCAGGCTTTGGCAAGCGGTACATTACGTGGT 28147 | || | || || | || |||||||||||||| || || ||| |||||||| || Sbjct 11761 TCAGCAAACGCCGCACTTGTTCAATTTGGGCAGGCATTAGCGTCCGGCACATTACGCGGC 11820 Query 28148 GAAGAACTCAACTCAGTTATGGAACAAACACCAGCTCTAGCAAAGGCTATTGCTCAAGGC 28207 |||||||| ||||| || ||||| ||||| || || || ||||| |||||||| ||| Sbjct 11821 GAAGAACTAAACTCCGTCATGGAGCAAACGCCTGCACTTGCAAAAGCTATTGCAACAGGT 11880 Query 28208 ATGGGGATCACCGTAGGAGAGTTGCGTTCAGTTGCGGCTGAAGGAAAAATTAC 28260 ||||| | || |||| | || || |||||||| || ||||| ||||| || Sbjct 11881 ATGGGCTTAACTATAGGCCAATTACGCTCAGTTGCCGCAGAAGGGAAAATCAC 11933 Score = 93.3 bits (102), Expect = 1e-14 Identities = 141/198 (71%), Gaps = 11/198 (6%) Strand=Plus/Plus Query 24511 TCAAAATGGTGTGAATACAAGGGGGTTGATGGCGAAGTACAGGCAGAGTTCAAAGTCCGT 24570 || |||||||||||||| || | | |||||||||||| | || | ||||||| ||| Sbjct 10365 TCGAAATGGTGTGAATATAAAGACGCTGATGGCGAAGTTCTTGCCAAAATCAAAGTACGT 10424 Query 24571 GGTATCGCCTATAAACCTTTTCAGGTAGCAATTGAACGAGCCGGAAATCAGATTTCATCC 24630 || || | ||||| |||| |||||| ||| | |||||||| ||| || || || Sbjct 10425 GGCATTTCGTATAAGCCTTATCAGGTCGCAGTAGAACGAGCGCAAAACCAAATCGCACAG 10484 Query 24631 AAAGGCTATGATGTGATGGTCA----AAGATGAAAATGCCAAGCTTTACCATGAATTGTT 24686 ||||||| ||| | ||| || ||| | ||| | ||| || | |||||||||| | Sbjct 10485 AAAGGCTTTGACG---TGGACACCGCAAG-CGCAAACGACAAACTATTCCATGAATTGCT 10540 Query 24687 AATGGATGCGTGTGCTGC 24704 | | ||||| |||||| Sbjct 10541 ACTTGATGC---TGCTGC 10555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144904105112284