Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq25532 89.7 4e-13 seq31860 86.0 5e-12 >seq25532 Length=5913 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || || |||||||| || || || || || || ||| || | | Sbjct 1144 ATGCAAATTTTCGTTAAAACATTGACAGGAAAGACAATAACGCTTGAAGTTGAGGCAGCC 1085 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || ||| | | | ||||| ||||| || ||||| || | || ||||||| Sbjct 1084 GACACGATTGAAAGTGTCAAGGGTAAAATTCAGGATAAAGAAGGCATCCCACCAGATCAA 1025 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || ||| | || ||||| ||||||||||||||||| ||| || ||| ||||| || Sbjct 1024 CAAAGATTGATTTTTGCTGGCAAACAATTGGAAGACGCTAGGACATTGGGTGATTACAAT 965 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 || || ||||| ||||| ||||| |||| | ||||| || || || Sbjct 964 ATCCAGAAAGAGTCTACATTGCACTTGGTTCTCAGATTGCGCGGTGG 918 >seq31860 Length=14314 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||||||||| | ||||| |||| || ||||| || || ||| | || ||| Sbjct 1062 ATGCAAATATTCATTAAAACCCTAACCGGAAAAACAATAACACTTGAAGCTGAGGGCTCA 1121 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || | | | || |||| || || || ||||| || | || |||||| Sbjct 1122 GATTCTATTGAAAATGTCAAATTGAAGATTCAGGATAAAGAAGGCATCCCACCAGATCAG 1181 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || ||| | || ||||| |||||||||||||||||| ||||| | ||| || ||| Sbjct 1182 CAAAGATTGATTTTTGCTGGCAAACAATTGGAAGATGGCAAAACACTTAGCGACTACAAC 1241 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 ||||||||||| || || |||| |||| ||||||| || || || Sbjct 1242 ATTCAAAAAGAGTCCACATTGCATTTGGTCCTAAGATTGCGCGGCGG 1288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424986105561903