Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq144 158 2e-33 seq31860 143 5e-29 seq25532 143 5e-29 seq36344 120 5e-22 >seq144 Length=14776 Score = 158 bits (174), Expect = 2e-33 Identities = 177/237 (75%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| || |||||||||||| || || |||| || | || | ||||| |||||| Sbjct 10783 AATTTGTAAACCACCTCTCAAGCGTAGGACCAAGTGTAGCGTCGATTCTTTTTGAATATT 10724 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 || ||||||| || ||| || ||||| ||||| || ||||| | | ||||| Sbjct 10723 GTAATCGGATAGGGTATGTCCATCTTCCAATTGCTTTCCAGCGAAAATGAGGCGTTGTTG 10664 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||| || || |||||||| |||||||| || |||||||| |||||| ||| | ||| || Sbjct 10663 ATCTGGTGGGATTCCTTCCTTATCTTGAATCTTGGTTTTAATATTTTCAATGGAATCAGA 10604 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||||||| |||||| |||||||| || | ||||| ||||| |||||||| Sbjct 10603 CCCTTCAACTTCTAAAGTTATGGTTTTACCGGTCAATGTTTTGACAAAGATTTGCAT 10547 Score = 149 bits (164), Expect = 1e-30 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| | | ||||| |||| |||||| |||| |||||| ||| || ||||| Sbjct 13543 ATACCACCACGGAGACGAAGGACCAAATGCAAAGTAGACTCTTTCTGAATGTTGTAGTCA 13484 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || || || | ||| || ||||||||||| || ||||| || | ||| ||||| ||| Sbjct 13483 GACAAAGTACGTCCATCTTCCAATTGTTTTCCAGCGAAAATCAAACGCTGCTGATCTGGA 13424 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || |||||||| ||||| || || | ||| | ||| ||||||||| |||| || Sbjct 13423 GGAATACCTTCTTTGTCTTGGATCTTAGCTTTCACGTTTTCAATAGTATCCGAAGGTTCG 13364 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| | || || ||||| || |||| ||||| || || |||||||| Sbjct 13363 ACTTCCAATGTGATCGTTTTTCCGGTTAAGGTTTTGACGAAAATTTGCAT 13314 Score = 149 bits (164), Expect = 1e-30 Identities = 162/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 || ||||||| ||||||||| | ||| || ||||| ||||| || || || | | Sbjct 14440 CGGAGTACCAAATGCAATGTCGACTCCTTTTGGATATTGTAGTCTGACAATGTACGGCCA 14381 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || ||||||||||| ||||||||||| || | ||||||||| ||||| || ||||| ||| Sbjct 14380 TCTTCTAATTGTTTGCCGGCAAAAATCAAACGCTGTTGATCTGGAGGGATACCTTCCTTA 14321 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| ||||| | ||| | |||| || || || || | ||| ||||| | || || Sbjct 14320 TCTTGAATTTTAGCTTTAACATTTTCGATTGTGTCCGAGGGCTCGACTTCCAAGGTGATG 14261 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || |||| ||||| || || |||||||| Sbjct 14260 GTTTTGCCAGTTAAGGTTTTCACGAAGATTTGCAT 14226 Score = 131 bits (144), Expect = 3e-25 Identities = 171/237 (72%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| |||||||| | | || || |||| ||||||||| | |||||| ||| || Sbjct 13210 AATTTGCATACCACCACGGAGACGGAGGACCAAATGCAATGTCGACTCTTTCTGAATGTT 13151 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||| || || | || | ||| || ||||||||||| ||||| || || | || || Sbjct 13150 ATAATCTGACAGGGTACGTCCATCTTCCAATTGTTTTCCAGCAAAGATCAAACGTTGCTG 13091 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||| || || || ||||| |||||||| || |||| ||| | ||| ||| || ||||| Sbjct 13090 ATCTGGGGGGATACCTTCCTTATCTTGAATCTTGGCTTTAACGTTTTCAATGGTGTCGGA 13031 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || |||||| || | || || || || || || | ||| || || || |||||||| Sbjct 13030 AGGCTCAACCTCCAATGTAATGGTCTTTCCAGTCAACGTCTTGACGAAAATTTGCAT 12974 Score = 120 bits (132), Expect = 5e-22 Identities = 168/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || ||||| | | || ||||||| ||||||||| | ||| || ||||| Sbjct 14005 ATTTGCATGCCACCACGGAGACGGAGTACCAAATGCAATGTCGACTCCTTTTGGATATTG 13946 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| || || || | ||| |||||||||||||| || ||||| || | ||||||| Sbjct 13945 TAGTCAGACAAAGTACGGCCATCTTCTAATTGTTTTCCTGCGAAAATCAAACGCTGTTGA 13886 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || ||||| ||||| || || |||| || | || || ||||| || Sbjct 13885 TCTGGTGGGATACCTTCCTTATCCTGGATCTTGGCCTTAACGTTCTCGATGGTATCCGAG 13826 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | ||| ||||| | || || ||||| || || | || || || || |||||||| Sbjct 13825 GGCTCGACTTCCAAGGTGATGGTTTTGCCAGTCAATGTCTTGACGAAGATTTGCAT 13770 Score = 105 bits (116), Expect = 1e-17 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 || || |||| ||||||||||| |||||| |||||| |||||||| || || | Sbjct 12960 CGGAGAACCAAATGCAATGTAGACTCTTTCTGAATATTGTAGTCGGACAAGGTACGTCCG 12901 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || || || ||||| ||||| || || | ||| || || || || || ||||| ||| Sbjct 12900 TCTTCCAACTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCTGGTGGAATACCTTCCTTA 12841 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || || || || | |||| || || ||||| || | ||| || || | ||| || Sbjct 12840 TCCTGGATCTTAGCCTTTACGTTCTCGATCGTATCAGATGGCTCGACCTCCAAAGTGATG 12781 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || ||||| || | || || || ||||| |||||| Sbjct 12780 GTCTTACCAGTCAATGTCTTGACGAATATCTGCATT 12745 >seq31860 Length=14314 Score = 143 bits (158), Expect = 5e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 193134 CCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGAT 193193 || || | ||||| || |||| ||||||||| | |||||| ||| || |||||| Sbjct 1288 CCGCCGCGCAATCTTAGGACCAAATGCAATGTGGACTCTTTTTGAATGTTGTAGTCGCTA 1229 Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253 | ||| | ||| || |||||||| || |||||||| ||||| || ||||| || || Sbjct 1228 AGTGTTTTGCCATCTTCCAATTGTTTGCCAGCAAAAATCAATCTTTGCTGATCTGGTGGG 1169 Query 193254 ATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACT 193313 || ||||||||||| || || || ||| | |||| ||||| ||| || |||| || Sbjct 1168 ATGCCTTCTTTATCCTGAATCTTCAATTTGACATTTTCAATAGAATCTGAGCCCTCAGCT 1109 Query 193314 TCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || ||||| ||||| || ||||| ||||| | ||||||||||| Sbjct 1108 TCAAGTGTTATTGTTTTTCCGGTTAGGGTTTTAATGAATATTTGCAT 1062 >seq25532 Length=5913 Score = 143 bits (158), Expect = 5e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 193134 CCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGAT 193193 ||||| | ||||| || |||| |||||||||| |||||| ||||| || || Sbjct 918 CCACCGCGCAATCTGAGAACCAAGTGCAATGTAGACTCTTTCTGGATATTGTAATCACCC 977 Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253 || || |||| || || |||||||| || |||||||| ||||| |||||||| || || Sbjct 978 AATGTCCTAGCGTCTTCCAATTGTTTGCCAGCAAAAATCAATCTTTGTTGATCTGGTGGG 1037 Query 193254 ATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACT 193313 || ||||||||||| || ||||| || | | || ||| || |||| | ||||||| Sbjct 1038 ATGCCTTCTTTATCCTGAATTTTACCCTTGACACTTTCAATCGTGTCGGCTGCCTCAACT 1097 Query 193314 TCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || ||||| || || ||||| | ||||| || || |||||||| Sbjct 1098 TCAAGCGTTATTGTCTTTCCTGTCAATGTTTTAACGAAAATTTGCAT 1144 >seq36344 Length=11671 Score = 120 bits (132), Expect = 5e-22 Identities = 171/241 (71%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 193120 AAGTAATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAA 193179 |||| |||||| |||||| | | || || |||| ||||||||| | || || | Sbjct 916 AAGTGATTTATTGACCACCACGGAGACGGAGGACCAAATGCAATGTTGATTCCTTCTGGA 857 Query 193180 TATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCT 193239 | || |||||||| || || | || || | ||| || || |||||||| || | | Sbjct 856 TGTTGTAGTCGGACAAGGTACGTCCGTCTTCGAGTTGCTTGCCAGCAAAAATCAAACGTT 797 Query 193240 GTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTAT 193299 |||| || || || ||||||||||| ||||| ||||| | ||||| ||| ||| || | Sbjct 796 GTTGGTCTGGGGGGATTCCTTCTTTGTCTTGAATTTTAGCTTTTACATTCTCAATTGTGT 737 Query 193300 CGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCA 193359 | || | || ||||| | || |||||||| || || | || || || |||||||||| Sbjct 736 CTGACGGTTCGACTTCCAATGTAATAGTTTTTCCAGTCAAAGTCTTGACGAATATTTGCA 677 Query 193360 T 193360 | Sbjct 676 T 676 Score = 105 bits (116), Expect = 1e-17 Identities = 127/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| |||||||| | | ||||| |||| || | |||| ||||| |||||| Sbjct 683 ATTTGCATACCACCGCGAAGACGAAGGACCAAGTGAAGCGTAGATTCTTTTTGAATATTG 624 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| || || || | ||| ||||||||||||||||| ||||| || | ||||||| Sbjct 623 TAGTCAGACAAAGTACGGCCATCTTCTAATTGTTTTCCGGCGAAAATCAAACGCTGTTGA 564 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297 || || || || ||||| ||||| || || |||| |||| |||| ||| || Sbjct 563 TCTGGTGGAATACCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCAATGGT 511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 898746232620240